Amal019848.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
-
Assembly
GCA_029378335.1
Location
CM055659.1:24711605-24718267[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 49 9 8.8e+02 1.7 2.3 3 23 12 33 11 33 0.96
2 49 0.00026 0.026 16.0 2.4 2 23 39 60 38 60 0.97
3 49 0.00075 0.074 14.6 0.4 2 23 67 88 66 88 0.97
4 49 8.1 7.9e+02 1.9 2.7 2 23 95 116 94 116 0.93
5 49 0.0009 0.088 14.3 1.1 2 23 123 144 122 144 0.97
6 49 0.013 1.3 10.7 3.7 1 23 153 176 153 176 0.96
7 49 0.005 0.49 12.0 0.0 2 23 183 204 182 204 0.96
8 49 0.00043 0.042 15.3 2.5 1 23 210 232 210 232 0.97
9 49 5e-05 0.0049 18.3 1.6 1 23 238 261 238 261 0.97
10 49 0.00024 0.023 16.1 1.3 1 23 267 289 267 289 0.99
11 49 0.0019 0.19 13.3 2.1 1 23 325 347 325 348 0.96
12 49 4.7 4.6e+02 2.6 2.3 3 23 355 376 354 376 0.96
13 49 0.00023 0.023 16.1 0.9 2 23 382 403 381 403 0.97
14 49 0.00037 0.036 15.5 0.3 2 23 410 431 409 431 0.97
15 49 2.8 2.7e+02 3.3 0.2 2 23 438 459 437 459 0.91
16 49 7.4e-05 0.0072 17.7 3.6 1 23 465 487 465 487 0.98
17 49 0.00025 0.024 16.1 0.9 1 23 496 518 496 518 0.96
18 49 0.00062 0.06 14.8 0.0 2 23 526 547 525 547 0.96
19 49 6e-05 0.0058 18.0 1.6 1 23 553 575 553 575 0.97
20 49 0.00016 0.016 16.7 1.1 1 23 581 604 581 604 0.96
21 49 0.001 0.098 14.2 0.7 1 23 610 632 610 632 0.99
22 49 3.8 3.7e+02 2.9 3.5 1 23 682 705 682 705 0.95
23 49 2.7 2.6e+02 3.4 1.8 3 23 713 734 712 734 0.91
24 49 1.1e-05 0.0011 20.4 3.6 1 23 739 761 739 761 0.99
25 49 1.6e-05 0.0016 19.8 0.9 1 23 766 788 766 788 0.98
26 49 0.0013 0.12 13.8 0.6 2 23 794 815 793 815 0.92
27 49 0.043 4.2 9.0 1.8 3 23 823 843 822 843 0.95
28 49 0.0025 0.24 12.9 2.4 1 23 852 874 852 874 0.99
29 49 0.00018 0.017 16.5 0.1 2 23 880 901 879 901 0.97
30 49 0.00064 0.062 14.8 0.1 1 23 907 929 907 929 0.97
31 49 1.4e-05 0.0014 20.0 2.1 1 23 935 958 935 958 0.95
32 49 0.052 5.1 8.8 3.1 1 23 997 1020 997 1020 0.97
33 49 0.14 14 7.4 0.3 2 23 1026 1048 1026 1048 0.96
34 49 0.18 17 7.1 1.2 2 23 1057 1079 1056 1079 0.93
35 49 2.5 2.4e+02 3.5 0.3 2 20 1087 1104 1086 1108 0.73
36 49 2.4e-06 0.00023 22.4 1.8 1 23 1114 1136 1114 1136 0.99
37 49 0.024 2.4 9.8 5.6 1 23 1145 1167 1145 1167 0.98
38 49 1.8e-05 0.0018 19.6 0.2 1 23 1173 1196 1173 1196 0.96
39 49 5.6e-05 0.0055 18.1 0.3 1 23 1202 1224 1202 1224 0.97
40 49 0.0022 0.22 13.1 3.8 1 23 1230 1253 1230 1253 0.94
41 49 0.062 6.1 8.5 3.0 1 23 1288 1311 1288 1311 0.97
42 49 0.27 27 6.5 0.2 2 23 1317 1339 1317 1339 0.95
43 49 0.57 56 5.5 3.3 2 23 1348 1370 1347 1370 0.92
44 49 2 2e+02 3.8 0.1 2 17 1378 1393 1377 1397 0.85
45 49 0.00013 0.013 17.0 3.2 1 23 1405 1427 1405 1427 0.99
46 49 3.3e-05 0.0032 18.8 0.2 1 23 1464 1487 1464 1487 0.95
47 49 2.2e-05 0.0021 19.4 0.5 1 23 1493 1515 1493 1515 0.97
48 49 8.6e-06 0.00084 20.7 4.5 1 23 1521 1544 1521 1544 0.96
49 49 0.00035 0.035 15.6 2.6 1 23 1550 1572 1550 1572 0.98

Sequence Information

Coding Sequence
ATGCGAAACGATCATAAAAAACCCTCTTCATTATGTCGTCAGTGTCTTACAGTATTTGAAGATATAAACGATTGTAGAAGACATCAAAGAAAAGTTCATGCGCGTAAACGTTTAATGTGTAAATACTGTAATCGACTATTTGAGTTCAATTTTAGTTTACAAAAGCATATGCAGACGCACGAGGATCGTCGTTTTATGAAATGCGATGTTTGTGAGAAAAAGTTTGTCACAAAAATGGGCCTGAGGATGCACGTCGAATCCCACACCGGTCAGAATCACATAACTTGTAATTTATGTAACAAAAAGATCCACAAACTACACATAGAGCGACACATTCAACTCGTACATAACAATAGAGAACCTATCAGGTGTGATTCGTGTcccaaaacatttaattacgAGAGGTCGTACAGAAATCATCTTAAAATACATCTTCCCGGTTATAAAACCCCTTGTTATAAATGCGACGAATGTGAAAGTAAATTTTCTCGTGAGAGGTGCTTGGCCAGGCACAAAAAGGAGCAACATGAGCAAAAACGGCGCATCATGTGCGAATTGTGCGGCAAAGTGCTCGCTACTATAGTGTCGCTTCGTACTCATCTGCTTGTGCACAAGGGCGAGAAGCCGCACACTTGCGAGACCTGTGGGAAATCGTTCACTGCGAGAAATACCCTTAAAATGCACAAGCTCGTTCACACGAAAGAGAAACCTTTTGTGTGTCGAGTGTGCGGCAAAGGCTTCACTCAACCACATTCCCTCAAGTTTCATATGCGCTCAATTCACACCAACGACAAACCTTATAAATGCACTCTATGCGAAAGGCAATTTGTCAGCAAAACTAGCATGAATGTTCATGTAAGAAGCCACGGGGTGTGTTCATTGAGTGAAGATTTTCGAATTAAAAACGAATGCATCGTTTTAGAAGACAGCGTATCAGTAAAAAAAAGTGCAGTAAGGTTATCAAGTTGTTTTTATAGATGCAATTTATGCGATCTAACTTCAAAAGACAAAAAGGCAGTTGTGACTCATATGCGCAATCATCATAAAAAGGTTGCCACATTATGCCGCCAATGTCGTATAGTGTTTGAGGATTTAAATCTTTGCAGAAGGCATCAAAGAAACGTCCACTGGCGTAAATGTATTCCGTGTAAATATTGTAATCGtattttcgaatttaattcCATTTTACAAAAGCATATGAAGACCCACGAAGATCGTTGTGTGATGAAATGTGACGTTTGCGAGAAGAAGTTTGTTTCTAAAGAAGGTTTAAAATTGCACGTTGAATCGCACACCGGTGAAAATCGAATTGTTTGTACATTGTGTAAAAAGGTAATCAATAGTAGGTTCATAGAGCGGCATATGCAAGAGGTCCACAAAAACGGCAAACCTTTCTCGTGTAATTTGTGTCCAAAATCGTTTAGGTACGATTCGTCgtacaaaaaacatttaaaaaaacaccgGCCCAACTATAAACCACCGAGTTATGAATGCGAGGAGTGCGGCATGAAATTTGCGAACGAAAAATCGTTAGCAAAGCACAAACACGAACACCGAGAGCAAAAACGAGACATTGTGTGCGAAATGTGCGGCAAAGCTCTTACGACGGCTGCTTCGTACAGGAATCATTTGCTCGTGCACAGAGGGGAGAGGCCGCACACTTGCGAAGTGTGCGGTAAGTCTTTTGCGGCCAAAAATACTCTTAAAAAGCACAAACTTGTTCACACGAAAGAGAAGCCGTTTGTGTGTCAGGTTTGTGATAAAGGCTTCACGCAAGCACATTCACTTAAGTTTCACATGCGCGCAATTCATACCCACGAAAAACCTTACAAGTGTGCTTTGTGTGAAATGAGGTTTGTTAGTAAAACTAGCATGAATGCACATGTCAAGAGGCATGGGtccaatttaaataaagcagCTTGTTTGGGTGCAAAATACTCGGTGTTGTACGTTGAAGAGTTTTCTGTTTTTTGCAGAGTTTCCGTCACGAAACTTGAGAAAGAAGACGTCTCCGTAAGTGAAGGCAACCACATCACAGATAATTTCAAATGTAATCAATGTACGTTCAGGTGTGACGAAAAAGCTGCTATCGTccatcatttaaaaaatattcacgaCAAAACTGCCGTCGCGTTCTGCACGTTTTGTAATCTAGTTTTCGATAATATGAAACTCCGAAAGAAACACTATTATTACGAGCATGTGCCCAAAAAGTACCCTTGTACAATTTGTACGTTGTCTTGCAAGTCAAAGTCTTTATTGAAGCGTCATTTACGAACCCACGAGGAACAACAATTCAAATGCGAGGTgtgtaacaaaatttttcgGTCCGACACGGGTCTTAAGCGGCACATGGATTCTCACGAAGGGAATCTCGTACCTTGTTCAGATTGCGgcaaaatgtttcataaaagcTACCTGTCCGCTCATTTCAGTATAGTCCACGGCGAACGTGCGGAGATCCTGTGCGTAAAGTGCAACAAAACGTTCAAAAGTCAATTAACGTACAATTTGCACAAGTACGTACACGAACCCGGCTTTAAACCGAACTTTTACGAATGTAACGATTGCGACGGTAAATTCAATTCGATGTACAGGTTGAAACAACACAGAAAACGTCACACCAGGGACAGTATGGTGTGCGAATTGTGCGGTAAAGCACTAATGACCAACTACGGTTTGCGGATTCATATGCGTGTGCATCGGGGTGAGAAACCGTTCGTTTGCGACGTTTGCGGAGGCTCCTTTGCTTTGCAGAGCACGTTAAAAGTACACAAACTGGTTCACACGAAAGAAAAACCCCACGTTTGTCACGTGTGCGGTAAGCGCTTTTCGCAAAGGACATCGCTCGTGTCGCACGTACGTGGTATACATACGAAAGAAAGACCTTACGGATGTTCCATCTGTGGAAAATCAGATCCACTTTAcataaaagaagaagaaaaaggtgAAGAAGCTGTTTTGGCCATAACTGAAAAGAGGGAATGGTTCAAATGCGGCGAATGTACGATTGCtttcagaaataaaaaggACGTTTTTTGTCACATGAAACGGGAGCACGAACCGAACCTTCGCGTTTGTAATATTTGCATGACAGCATTTCGAAACGAACAGGATCGCAACAAGCACCAGATGATTGTACACATGAAAAAACAGAAACGTCTAGTAAGATGCGGCGAGTGCGGTAGAGGGTGTACAACTGatttaaaacttaaacaacACACCCTTTTGTATCATTTcgataatttaaaagttatacGATGCGAATACTGCAACAAAGTGATAAAAGTATCAAATTGGTTTAATCACGTCACTCAGCAACATATCGATCGTCAAACTTTCAAATGTGACGTTTGCAAAAAGGTATTTCGCAGTAAAAGTTTCTTGACAATCCACCAGGCCACTCACAAACCTGATTATGTCAAGCCTAGTTTTAAATGTGAAAAATGCTGTCTAAGCTTTACGACAAAAGTTAATATGAGAAAACATAAACGGGCCCATGAAAATCCGAACGTATTCGTATGCGAACATTGCGGCAAAACGGTGACTTCTGCTGCTAGTTTGCAGAGTCACATAACAGTGGTACATGAGCGCGAAAGACCATACATTTGTGACGATTGCGGTAAAAGTTTCGGTAGCCGCAATACGTTGCTTATTCATAGGCTGCAACACACGAAAGAGAAACCTCACGTGTGTCATTTGTGCGGTAAGTGCTTCTCCCAAAGACCCTCGCTTGTGTTTCATATACGTGGAATTCACAAGAAGGAAAGACCTTATGAATGTTCCATCTGTGAAAAATCAGATCCACTTTAcctaaaagaagaagaagctgTATTAGCCGTAACTGAAAAGAGGGAATGGTTCAAATGCGGTGAATGCACGATTGCTTTCAGAAATAAAAGAGACGTTTTTTGTCACATGAAACGGGAGCACGAACCGAACCTTCGCGTTTGCAATATTTGCATGACAGCTTTTCGAAACGAACAGGATCGTAACAAACATCAAATAATCGTACACAAGAAAAAGCAGAAACGTCTCGTAAGATGCGACCAGTGTGGCAGAGGGTGTACGACAGATCTAACACTTAGACATCACAAACTTCTGTATCATTTCGATAACTTAAAAGTTATACGATGCGAATACTGCAACAAAGTGATAAAAGTGAAGAATTGGCTCAATCACGTCACCCAGCAGCATATCAATCCCCAAACATTCAAATGTGATGTTTGTAAAAAGGTGTTCCATAGTAAGAGTTTTTTGTCAATTCACCAGGCCACTCACAAACCTGATTATGTGAAGCCTAGTTTTAATTGTGAGAAATGCTGTCTAAGCTGGACGACAAAAGCGGCTATGAGGAGACACAAACGGGCTCACGAAAATCCGAACGTATTCATATGCGAACATTGCGGCAAAACTGTGACTTCTGCTGCTAGTTTGCAGAGTCACATTACTGTGGTACATGAGCACGAAAGACCGTACACTTGTAACGATTGTGGTAAAGGTTTCGGAAGCCGCAATACGTTGCGGGTTCATAGATTGCTACATACGAAAGAAAAACCTCATATGTGTCACATGTGCGACAAACGGTTCACGCAACGTAATTCGTTGGTGGCTCACATGAGGTCCATGCATACGGGGGAGAAACCGTACAAGTGTCGTTTTTGTACCAAATCGTTTGTAACAAATAGTGCGATGAAGTTGCACGCGAAACGTCACGATATAGTTTAG
Protein Sequence
MRNDHKKPSSLCRQCLTVFEDINDCRRHQRKVHARKRLMCKYCNRLFEFNFSLQKHMQTHEDRRFMKCDVCEKKFVTKMGLRMHVESHTGQNHITCNLCNKKIHKLHIERHIQLVHNNREPIRCDSCPKTFNYERSYRNHLKIHLPGYKTPCYKCDECESKFSRERCLARHKKEQHEQKRRIMCELCGKVLATIVSLRTHLLVHKGEKPHTCETCGKSFTARNTLKMHKLVHTKEKPFVCRVCGKGFTQPHSLKFHMRSIHTNDKPYKCTLCERQFVSKTSMNVHVRSHGVCSLSEDFRIKNECIVLEDSVSVKKSAVRLSSCFYRCNLCDLTSKDKKAVVTHMRNHHKKVATLCRQCRIVFEDLNLCRRHQRNVHWRKCIPCKYCNRIFEFNSILQKHMKTHEDRCVMKCDVCEKKFVSKEGLKLHVESHTGENRIVCTLCKKVINSRFIERHMQEVHKNGKPFSCNLCPKSFRYDSSYKKHLKKHRPNYKPPSYECEECGMKFANEKSLAKHKHEHREQKRDIVCEMCGKALTTAASYRNHLLVHRGERPHTCEVCGKSFAAKNTLKKHKLVHTKEKPFVCQVCDKGFTQAHSLKFHMRAIHTHEKPYKCALCEMRFVSKTSMNAHVKRHGSNLNKAACLGAKYSVLYVEEFSVFCRVSVTKLEKEDVSVSEGNHITDNFKCNQCTFRCDEKAAIVHHLKNIHDKTAVAFCTFCNLVFDNMKLRKKHYYYEHVPKKYPCTICTLSCKSKSLLKRHLRTHEEQQFKCEVCNKIFRSDTGLKRHMDSHEGNLVPCSDCGKMFHKSYLSAHFSIVHGERAEILCVKCNKTFKSQLTYNLHKYVHEPGFKPNFYECNDCDGKFNSMYRLKQHRKRHTRDSMVCELCGKALMTNYGLRIHMRVHRGEKPFVCDVCGGSFALQSTLKVHKLVHTKEKPHVCHVCGKRFSQRTSLVSHVRGIHTKERPYGCSICGKSDPLYIKEEEKGEEAVLAITEKREWFKCGECTIAFRNKKDVFCHMKREHEPNLRVCNICMTAFRNEQDRNKHQMIVHMKKQKRLVRCGECGRGCTTDLKLKQHTLLYHFDNLKVIRCEYCNKVIKVSNWFNHVTQQHIDRQTFKCDVCKKVFRSKSFLTIHQATHKPDYVKPSFKCEKCCLSFTTKVNMRKHKRAHENPNVFVCEHCGKTVTSAASLQSHITVVHERERPYICDDCGKSFGSRNTLLIHRLQHTKEKPHVCHLCGKCFSQRPSLVFHIRGIHKKERPYECSICEKSDPLYLKEEEAVLAVTEKREWFKCGECTIAFRNKRDVFCHMKREHEPNLRVCNICMTAFRNEQDRNKHQIIVHKKKQKRLVRCDQCGRGCTTDLTLRHHKLLYHFDNLKVIRCEYCNKVIKVKNWLNHVTQQHINPQTFKCDVCKKVFHSKSFLSIHQATHKPDYVKPSFNCEKCCLSWTTKAAMRRHKRAHENPNVFICEHCGKTVTSAASLQSHITVVHEHERPYTCNDCGKGFGSRNTLRVHRLLHTKEKPHMCHMCDKRFTQRNSLVAHMRSMHTGEKPYKCRFCTKSFVTNSAMKLHAKRHDIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-