Amal023459.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055661.1:2374959-2376945[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-07 7.5e-05 23.4 0.0 12 43 27 58 19 60 0.87
Sequence Information
- Coding Sequence
- ATGCCGACCGACTATAATCGAATAAATGTGTCTCGCGGAAACTGGACACAGGCAAACTTACaattggtgatgacaaacgtCAAAGAGGGAAAAATGACTATTGGGGAAGccagtaaaaattttgaaatacctagaagaactttaaaaagaagaattgaaaaaaataattccgaAAAAACTGGAATGGGACCAACCAGTACACTAGGCAGGGACGCAGAACAAAAATTGGTGAAtcacataattaaattacaaaaacatgGTTTTTCTCCATCCAGGCAAGATGTAAGAGAAATGGCATTCCGATTAGCTGAACGTTTAAACTTGATGCATAAGTTTAACAGAGAAAAATGTTTAGCAGGCTACGATTGGTTGCATTCATTTTTGCGTAGAAATCCACAACTTTCTATTAGAAAGGCAGAGGGCTTATCAAAACATCGCAGTGAAGGTATGAACAGAGATACtgtctcaaaatattttcagttactTCAACAAGTGTTAGAAGAAAGTGATCTATTTGACAAACCgtctaatatttataatatggaCGAAACAGGATTGCAACTCAATGATAAACCTGGAATAGTGATAGCTCAAAAAGGTTCTAAATCGGTAACAGCAATTACTGCTGCTGAAAAAGGCGAGACtataacaattattacatGTTGCAACGCGGAAGGCGTTTTTCTTCCTCCAGCAGCTATCTtcaaaggaaaaaatttaaaaaaagaatttgtaGATGAAATGCCCCCAGGTTCTCAAGTGTATATGTCTCCAAAATCGTCTTACATCAATTCAGATATATTTCGAAAGTGGTTAGAAGAGCATTTCTACCCTCGAAAGAGTGCTGGAAAAGCGTTATTGATATTCGACGGACATGCGTCCCACTGTAATAATTTGGAAACACTACAGTTTGCAGATGACCATGACATTATATTATTGTGCCTTCCACCGCACACTACTCACTATTTGCAGCCGTGGGATAGAGCGATCTCGCGAATCACATTCGTAACTATCCTGAGTCAAGCTTGGGGAAAAGTGGCTTCTCTACAAAATGGAATATCAGGATTTGCATCTACgggAATCTATCCGTTTAATCCTGCGATAATACCTGACTATGCATTCGTAGATATCCAACATACAGTCCAAGAACAAATTCAGAGCGCTCCAAACAATGAGAAAGCTACTAACGACTTAAATCAGGAAGACGAAATTGACACTTCTCCTTCTACATCAACTAATCAGCAGCACAATATTTACAGAACAACGGTGGCAAGCCCACAACCATCCACTTCAGGTCTCAATGATCAGATTACTCCAGGTAAACCACGACACGTTCGATCGACAAAGCAACGATCTACATCATCTAGTGACACGTCAGAATCCAGGATTTCGTTAAATGATTCTACTGACGATGACTGCTTTGGTGATGATACAAGCGAATGTGTTGGATGTGGTGAAGAGTATCTAAAAACCACCAAACAAGATGACTGGATTCGATGCATACATTGCAAACAGTGGATGCACGAGTCCTGCACAAAATTTGTCAATATATGTGACCTATGTGCCAAAATTCTggctaaaaaaaaataa
- Protein Sequence
- MPTDYNRINVSRGNWTQANLQLVMTNVKEGKMTIGEASKNFEIPRRTLKRRIEKNNSEKTGMGPTSTLGRDAEQKLVNHIIKLQKHGFSPSRQDVREMAFRLAERLNLMHKFNREKCLAGYDWLHSFLRRNPQLSIRKAEGLSKHRSEGMNRDTVSKYFQLLQQVLEESDLFDKPSNIYNMDETGLQLNDKPGIVIAQKGSKSVTAITAAEKGETITIITCCNAEGVFLPPAAIFKGKNLKKEFVDEMPPGSQVYMSPKSSYINSDIFRKWLEEHFYPRKSAGKALLIFDGHASHCNNLETLQFADDHDIILLCLPPHTTHYLQPWDRAISRITFVTILSQAWGKVASLQNGISGFASTGIYPFNPAIIPDYAFVDIQHTVQEQIQSAPNNEKATNDLNQEDEIDTSPSTSTNQQHNIYRTTVASPQPSTSGLNDQITPGKPRHVRSTKQRSTSSSDTSESRISLNDSTDDDCFGDDTSECVGCGEEYLKTTKQDDWIRCIHCKQWMHESCTKFVNICDLCAKILAKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031843;
- 90% Identity
- -
- 80% Identity
- -