Amal026476.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055662.1:9239344-9241182[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-09 4.7e-07 30.4 0.0 2 41 17 55 16 58 0.87
Sequence Information
- Coding Sequence
- ATGCCAacgaaatataaaagaaaaaacgcaAATCGTGGTAATTATACTGATGCAAATTTGAGGCTGGCAATTGAAGCGGTAAAAAATGGTTCGTCTATAAACAGCGCCTCAAAAACTTATGGCATTCCCAGAAAAACccttgaaagaaaaataaaaaataatgtgtcCACGACTGGAAGGATGGGACCTGATAGCATGTTGGGGGAgccaaatgaaaataaattagtgcAACACATTAAAAAGTCACAAAAATACGGTTTTCCTATGACGATACTAGATATTCGAAAACTTGCCTATAATTTCGCTGAAAGTCTACAAATCAATCACAAgttcaataaagaaaaagaaaatgctgGTTCCGATTGGTTTAGGTCCTTTTTGAGAAGACATCCCGATTTGTCGATTCGCAAAGCTGAGGGTGTATCTCTAGGGCGAGGTGAGGGCATGAACCGTGTAGATGtaggaaattattttaaacttctGCAAGAAATACTGGAACAGAATGAGCTTTTCGACAAACCTGGGTGCATCTATAATGTCGATGAAACAGGCCTTCAATTAAATAACCGTCCTGGCAATGTCTTAGCCGAAAAAGGAGCGAAGAATGTTGTTATAGTGACATCAGGGGAAAAGGGTGAGACAATCTCGTGCATAGCATGCTGTAATGCTGAGGGTTTTTTTCTGCCGCCAGTGTGTATATTTAAAGGTAAGAATTTAAAGACCGAATGGACTGATTCAATGCCGCCCGGTTCACAAGTTGTGATGTCTCAAAAATCGGCCTATGTTactgcaataatttttttggattGGTTTAAAAACCACTTCTTGCCACGTAAAGGCGAAGGGAAGACACTATTAATTCTTGACGGGCATGCATCGCACTGTTCTTGTGTTGAACTTTTAGAAACCGCTGAGACAAATAATGTCGTATTATTGTGTCTGCCTCCACATACTACCCATTATTTGCAGCCCCTCGATAGGGCTTTTTTTAAGTCCCTTAAAACCTTTTATTATCAATCATGCAGAGAATGGATGCAAAGTCACCCCGGAAGGAAACTAGGACGACTCCAATTTGGTGAACTTCTAACGAAAAGCTGGGGAAAGTCAGCAACCGCTGGAAACGCAATGTCCGGCTTCAGAGCTACTGGGATATTTCCCTGGAACCCTGATTCCGTACCCGATCATGCTTACACAGTTTCTGATAGAATAGTAATCAGCGAAACCAATGAAGACCAGAGAACACTCATACAACTAACAAACAGTCAACATTCAAACAAAACACAAGAAGTAAGACGCCCAATTAATTTGATGGATGATGATATGCCATCCTGTAGCCATGCTGGTCCTATAGAGCCTCGAAGTACAACACCAGTGGAACAGACATCTGTTTCAGACCTGACACCTGGAAAACTTTTAGATCAGATTCACCCCACACCCAAACTAGTCGTTTCTGCAAAAAAACGAGCAAAGACCGTTGCTACCCTATTAACATCTCCTGAACATATTGCAAATGTGAAAGAAAGGTCcgccaaaaaatatatacaaactAAGAAGAACACCCCGCAGAAGAAAAAAGTtgttcaaaaaagaaaacgctCACCTTCACCAAGTTCTGATGACGAGGATATAGAAGTTCAGTATGAAGAGGAAAGTGATACCCTTTCCGAGGTGGATGAAACTGAATGTACGGGATGTGGAGAAAGCTACAACAATACCAGAAGAAAAGAAGATTGGTTGCAATGCATAATATGCCAGAAGTGGTTTCACGAAAATTGCTCCTCTTATGTAAATACTTGTCAAAATTGTGGCAAAACTGCGTTTAAAAAGAAGCAGAATTGA
- Protein Sequence
- MPTKYKRKNANRGNYTDANLRLAIEAVKNGSSINSASKTYGIPRKTLERKIKNNVSTTGRMGPDSMLGEPNENKLVQHIKKSQKYGFPMTILDIRKLAYNFAESLQINHKFNKEKENAGSDWFRSFLRRHPDLSIRKAEGVSLGRGEGMNRVDVGNYFKLLQEILEQNELFDKPGCIYNVDETGLQLNNRPGNVLAEKGAKNVVIVTSGEKGETISCIACCNAEGFFLPPVCIFKGKNLKTEWTDSMPPGSQVVMSQKSAYVTAIIFLDWFKNHFLPRKGEGKTLLILDGHASHCSCVELLETAETNNVVLLCLPPHTTHYLQPLDRAFFKSLKTFYYQSCREWMQSHPGRKLGRLQFGELLTKSWGKSATAGNAMSGFRATGIFPWNPDSVPDHAYTVSDRIVISETNEDQRTLIQLTNSQHSNKTQEVRRPINLMDDDMPSCSHAGPIEPRSTTPVEQTSVSDLTPGKLLDQIHPTPKLVVSAKKRAKTVATLLTSPEHIANVKERSAKKYIQTKKNTPQKKKVVQKRKRSPSPSSDDEDIEVQYEEESDTLSEVDETECTGCGESYNNTRRKEDWLQCIICQKWFHENCSSYVNTCQNCGKTAFKKKQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031797; iTF_01242798; iTF_01242730; iTF_01242732; iTF_01242735; iTF_01242770; iTF_01242739; iTF_01242743; iTF_01242935; iTF_01242777; iTF_01242765; iTF_00846739; iTF_01242710; iTF_01329719; iTF_01329720; iTF_00646782;
- 90% Identity
- iTF_00031797;
- 80% Identity
- -