Amal000753.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055654.1:9545869-9546354[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-10 5.2e-08 33.5 0.0 1 42 11 52 11 54 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAGCGCGGCAAATATGGACGTTATACAGAAACTGACATGGCTATGGCTATTAGAGCTTATAAAGAAGGTGAAGTAGGTTTGAATGAATGTAGTCGAAGGTACAATATATCCAAATTCACTCTTCTGAGGCATGTAAGAGGTACTAATAAACTGGCCAAAGACGATgtgaaaaaatttagaaacaaatgtgttttttcAGCTGAAACTGAAAATGTACTAGTAAAGCAAATTATTCAATTTGAAGAAATGCTCTATGGATTTACCATAACAGACATAAGGCGATTAGCTTTTCAGTTGGCGGAAAAACACACGTTGCGCCATCCATTTAAcacagataaaaaaattgccgGTAAAAAGTGGTTCTATGCATTTATGCGTAGACATCCCGAACTAGCAGTGCGCCAACCAGAATCTACATCTTTTGCCAGGGCACGAGGTTTTGACAGAGAAAAAgtaatgcaattttttacatgCTATTga
- Protein Sequence
- MSKRGKYGRYTETDMAMAIRAYKEGEVGLNECSRRYNISKFTLLRHVRGTNKLAKDDVKKFRNKCVFSAETENVLVKQIIQFEEMLYGFTITDIRRLAFQLAEKHTLRHPFNTDKKIAGKKWFYAFMRRHPELAVRQPESTSFARARGFDREKVMQFFTCY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031746; iTF_00031780;
- 90% Identity
- -
- 80% Identity
- -