Amal010027.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055656.1:20018973-20019407[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-10 5.4e-08 33.4 0.0 2 41 17 55 16 58 0.88
Sequence Information
- Coding Sequence
- ATGCCAacgaaatataaaagaaaaaacgcaAATCGTGGTAATTATACTGATGCAAATTTGAGGCTGGCAATTGAAGCGGTAAAAAATGGTTCGTCTATAAACAGCGCCTCAAAAACTTATGGCATTCCCAGAAAAACccttgaaagaaaaataaaaaataatgtgtcCACGACTGGAAGGATGGGACCTGATAGCATGTTGGGGGAggcaaatgaaaataaattagtgcAACACATTAAAAAGTCACAAAAATACGGTTTTCCTATGACGATACTAGATATTCGAAAACTTGCCTATAATTTCGCTGAAAGTCTACAAATCAATCACAActtcaataaagaaaaagaaaatgctgGTTCCGATTGGTTTAGGTCCTTTTTGAGAAGACATCCCGATTTGTCGATTCGCAAAGCTGAGGGTGTATCTCTAGGGTGA
- Protein Sequence
- MPTKYKRKNANRGNYTDANLRLAIEAVKNGSSINSASKTYGIPRKTLERKIKNNVSTTGRMGPDSMLGEANENKLVQHIKKSQKYGFPMTILDIRKLAYNFAESLQINHNFNKEKENAGSDWFRSFLRRHPDLSIRKAEGVSLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115716; iTF_00115944; iTF_00002308; iTF_00115787;
- 90% Identity
- -
- 80% Identity
- -