Amal010283.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055656.1:20720515-20722210[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-10 3e-08 34.3 0.1 7 41 21 55 20 57 0.92 2 2 5.6 1.1e+03 0.5 0.1 18 28 261 271 261 272 0.92
Sequence Information
- Coding Sequence
- ATGAGGACCTACCAAAAAGCTCCTGGCAGCCGGCCATATGCCAACTACAGCGAAGAAAATAAAGCAGTGGAGGCAGTTCGAAGCGGTATGAGCAAAAACCTAGCTGCTCAAACCTATGGGATCCCACGCATGACTCTAGTCTATAGATGCCTTGTAAGGCACACGAAGTCTGTTGGACATCCGACAGTCCTTAGTAAGGAAGAAGAAGGGTTAATTTCACGAACCTTGGGAGTGGTGGCAGAATGGGGATTGCCACTAACAAAGCCAGATATAAAGGCGgttcttaaaaaataccttGACAAAAAGGCATCAAATATCAAGAGATCCCGATCCTCAGTGGACCAACAAGatgttttaaagttttttacaaACAATACACCTGCATTATTAGAGTCCAGTGGGGATCATATATACAACTATGACGAAACAAACGTCACTGATGACCCAGGTGCTAGAAAGGTCATTGTTCCACGAAACTCGAAAAGGATCGAACGTGTCCAAAATTATTCCAGAACAGCCATTAGCATAATGGTCTGCGGTAGCACCAGTGGAGTCTTGTTGCCGCCCATGGTGGTATACAAAGCcagtaatatttatgaaaactgGTGTAAAGGCGGCCCACCAGGAactgtttacaaaaatatttcaagtgGCTGGTTTGACGCCAATTTGTTTGAGATAtggtttaaagaaattttacttCCATATGTTCTAAGAACAAGAGAACCTGGAAAAAGAGTGATCCTCGTAGGAGACAACTTGGCCAGCCATTTTGCTCCAAGTGTCGTACAGGCAGCACAAGAACATGATATATATATGAGCCCATTTCCTCCCAATGCCACACGTCTAATGCAACCATTAAATATTGCGGTATTCGGGCCAATGAAAAAGAGATGGCGTGAGATTCTCGAAACCTGGCGAAAAGAAAGTCGATATCCTGGGTCAATTCCAAAAGAACACTTTCCCATTTTACTGAACAGACTTTGGGGGAGTTCAAAATCAAGAGAAGAAAAGGAAACgaggaaagaaaaaaaagcagGGCAAGATGTTTCGTCAATCACCTCCTCAGAAGTAGACGGCAGCGCCTTGAATATTGTCGTTGATGATGCACAACCATCCACCTCTAAAGGAAATTCGAAGAGCGCAACAAATGAATCAAAGTTGGGTGTTAAGGACAGTTCAGATGAAGATCTCTACCATACAGACGAAGAGGACGAATATGTGCCTGATAACTAA
- Protein Sequence
- MRTYQKAPGSRPYANYSEENKAVEAVRSGMSKNLAAQTYGIPRMTLVYRCLVRHTKSVGHPTVLSKEEEGLISRTLGVVAEWGLPLTKPDIKAVLKKYLDKKASNIKRSRSSVDQQDVLKFFTNNTPALLESSGDHIYNYDETNVTDDPGARKVIVPRNSKRIERVQNYSRTAISIMVCGSTSGVLLPPMVVYKASNIYENWCKGGPPGTVYKNISSGWFDANLFEIWFKEILLPYVLRTREPGKRVILVGDNLASHFAPSVVQAAQEHDIYMSPFPPNATRLMQPLNIAVFGPMKKRWREILETWRKESRYPGSIPKEHFPILLNRLWGSSKSREEKETRKEKKAGQDVSSITSSEVDGSALNIVVDDAQPSTSKGNSKSATNESKLGVKDSSDEDLYHTDEEDEYVPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115705;
- 90% Identity
- -
- 80% Identity
- -