Amal019924.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- ttk
- Assembly
- GCA_029378335.1
- Location
- CM055659.1:25513871-25516621[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-15 1.5e-12 48.0 0.0 2 43 414 456 413 458 0.94
Sequence Information
- Coding Sequence
- ATGACAATGCAACAGTACTGTTTACGATGGAACAATCATCAGCCGAACTTTATATCAGTATTCTCTAGCCTTCTGAACAGCGAGTCCTTGGTTGATGTTACGCTAGCTGCAGAGGGGCGACACTTACAAGCACACAAAGTTGTTTTATCAGCATGTAGCTCCTATTTCCAATCTCTCTTCACGGTAAATCCTTGTAAGCATCCAATTGTTATACTTAAGGATGTTAAATTCAAAGACCTAAAGGTCATTGTGGATTTTATGTATTACGGTGAAGTGAATGTGTCACAGGAACAACTTcctcatattttaaaaaccgcAGAGATGCTAAAAATTAAAGGCTTGGCTGAAATTCCAGTGGAACCTTCCAGCTTAACAAAGTCCCAGACAAATTCATCAGAACGTGCAGAATTATTAACATCCAATGATCCAAATTGGACATCAGAAGCAGGACAAAGATCTACACTGTCTCCGACAACTTGTCCTCTTTCACCTTCAAGTAAAAGaaaaaGGCTAAGAAAGTCCTCAACAGGATCTGGTTCTGGTTCAACAGAACGTATCATGGAAGAACCAGCAACAAATGAGGTCACTGTTACTTCCCCTGGAGGTAGTACACTTGGCACTCTTATAAAACCGGATCCAGGTGGTTTTTCTTCAGCCCCAAATACTCCTTTACGTATCAAACAACACAGCAGTGATTCTGACACCCTTCCAAGGGGTAATTCTCATGAGAGTGCTGATGGCGATGTTACCCACCAAATCACTTTGGTAGGGACAACATTAAGAcaAGTACCCCAGCAAGAACAACAGAGTGCCCCACCCAGTGTTGAGCCACAATCAGTAGAAGCAGCACCCAATTCTTCATGCAGTGCTTCACAACAGCAATCTGTACAAGGAATGCCATGGGGCATCATGGAGGGCGGCTATCCACGTTTCGCCTTCTCCGCCTCATGTCCGCCCAGTATGCCGTCGTCAACGAACAACGGTCCCGTCTCCACGACCGTCGTCACCGCCTCTTCTGAACTGTCTTACGTCAATGTATCAACCGTCGTTAACCATTGCAGCATGTTCGCCTCGGGGAATTCCGGATCTGTAGTGAACGAAAACGCGGACACTTCTGACGGACCGCCGCCTCCCCAACAGCAACCGCCAAGCACCATCAACTCCAGTCACATGTCCTCTTCATCGTCTTCGCCTCCATCACTTatgcaaaaaagaaaaagaagcgtAAATCCTCAAGCTGATGAGAATTTCGTACGCGCCTTGGAAGCTGTCCGTTTCGGCGGAATTGGTTTCTGCAAGGCTGCTAAGATGTATGGTGTCAACAACAGAACACTCTGGctcgaatttaaaaaaagaggcTACGAAAATAATCGGCAAAGTATTAAGAACAGGAACGTGGTAAAACAAGAAAGTGGCGCCGTGATAGTCGAGCAGCAACCCAGAAAGGAAACCTCTCCAAATGGACAACAGCAACAAGGAGTTaatcaacaacaacagcagcaacagcaacaacaacagcaacagcaGCAGGATGGAGGTGGCGGTGGAGGACAACATGAGAACGTCGGTGGAGCCCCACAAATGACCATGATAAGTGGTGCGTTCGTGGACAACAAGCAGATGGACTTTGCATCCGTGATGCAGCATCGGCCCAAGTACTTCGAAAATTCGGTGTACAATCCGTTGCACGCGCTCAACCTGCAAGCCATCAACTTCGAACAGATTTGA
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTVNPCKHPIVILKDVKFKDLKVIVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEIPVEPSSLTKSQTNSSERAELLTSNDPNWTSEAGQRSTLSPTTCPLSPSSKRKRLRKSSTGSGSGSTERIMEEPATNEVTVTSPGGSTLGTLIKPDPGGFSSAPNTPLRIKQHSSDSDTLPRGNSHESADGDVTHQITLVGTTLRQVPQQEQQSAPPSVEPQSVEAAPNSSCSASQQQSVQGMPWGIMEGGYPRFAFSASCPPSMPSSTNNGPVSTTVVTASSELSYVNVSTVVNHCSMFASGNSGSVVNENADTSDGPPPPQQQPPSTINSSHMSSSSSSPPSLMQKRKRSVNPQADENFVRALEAVRFGGIGFCKAAKMYGVNNRTLWLEFKKRGYENNRQSIKNRNVVKQESGAVIVEQQPRKETSPNGQQQQGVNQQQQQQQQQQQQQQQDGGGGGGQHENVGGAPQMTMISGAFVDNKQMDFASVMQHRPKYFENSVYNPLHALNLQAINFEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030322;
- 90% Identity
- iTF_00032147;
- 80% Identity
- iTF_00032147;