Amal027541.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055662.1:13806231-13807343[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00032 0.062 14.0 0.1 2 25 16 39 15 39 0.91 2 2 4.7e-11 9.2e-09 35.9 0.0 4 40 67 103 66 107 0.93
Sequence Information
- Coding Sequence
- ATGGTGTATTCATATAAAAGAAGATCTGATAGAGGTAACTGGAATGAGGCGGACATGCAGAGAGCCCTGGAAGCTGTTCGCAACCGTGAAATGGGCTGGCTAAAAGCTAGCAAAAAGCCAAAGAGGTGTTgcgaaaaaaaaaagATGCCCACGGAGTACAAACGTAAGTGTCCAGAACGAGGGAAATGGACTGCACCACAATTGCAGCAAGCTTTAGATGCAATAAATGATGGTCGCATGGGTGTCAATGAAGCCTCCCGTGTGTTTGGTATTCCTTCTAGAACTCTTCGAAGATGTCTACAAAATAATGCAGAAAAAACAGCAATGGGTCCTTCGTCTTTGTTTGTCAGAACAAATGAACAGAAGTTAGTCCTACACGTACAAAAACTACAAGCAAGAGGTTTCAGTCCTTCTAGATATGACCTGAGGAAAATGGCCTATAAATTTGCAGTTGCCTTGGGAATTACACATAAATTTGATATCGAAACGGAAAAAGCTGGCTACGATTGGCTGAACAGCTTTTACGTAGAAATCCAATCCTCTCTATACGTAAACCGGAAGGTATGTCTCTAG
- Protein Sequence
- MVYSYKRRSDRGNWNEADMQRALEAVRNREMGWLKASKKPKRCCEKKKMPTEYKRKCPERGKWTAPQLQQALDAINDGRMGVNEASRVFGIPSRTLRRCLQNNAEKTAMGPSSLFVRTNEQKLVLHVQKLQARGFSPSRYDLRKMAYKFAVALGITHKFDIETEKAGYDWLNSFYVEIQSSLYVNRKVCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -