Basic Information

Insect: Agrilus cyanescens
Gene Symbol: -
Assembly: GCA_947389935.1
Location: OX376704.1:34643632-34645541[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.5e-06 0.00037 22.2 0.3 2 23 53 75 52 75 0.96

2 10 8.9e-07 0.00022 22.9 2.1 1 23 88 111 88 111 0.97

3 10 5.3 1.3e+03 1.6 0.1 3 23 132 155 130 155 0.86

4 10 9 2.2e+03 0.9 1.9 3 14 201 215 200 216 0.84

5 10 2.3 5.7e+02 2.7 2.4 2 20 279 297 278 299 0.91

6 10 1.4e-05 0.0033 19.2 2.4 2 23 309 330 308 330 0.91

7 10 0.00011 0.028 16.3 5.4 1 23 336 358 336 358 0.99

8 10 3.8e-07 9.3e-05 24.1 3.6 1 23 364 386 364 386 0.99

9 10 7.7e-05 0.019 16.8 5.7 1 21 392 412 392 415 0.95

10 10 0.00039 0.096 14.6 3.2 2 23 424 445 424 445 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.5e-06	0.00037	22.2	0.3	2	23	53	75	52	75	0.96
2	10	8.9e-07	0.00022	22.9	2.1	1	23	88	111	88	111	0.97
3	10	5.3	1.3e+03	1.6	0.1	3	23	132	155	130	155	0.86
4	10	9	2.2e+03	0.9	1.9	3	14	201	215	200	216	0.84
5	10	2.3	5.7e+02	2.7	2.4	2	20	279	297	278	299	0.91
6	10	1.4e-05	0.0033	19.2	2.4	2	23	309	330	308	330	0.91
7	10	0.00011	0.028	16.3	5.4	1	23	336	358	336	358	0.99
8	10	3.8e-07	9.3e-05	24.1	3.6	1	23	364	386	364	386	0.99
9	10	7.7e-05	0.019	16.8	5.7	1	21	392	412	392	415	0.95
10	10	0.00039	0.096	14.6	3.2	2	23	424	445	424	445	0.98

Sequence Information

Coding Sequence: ATGGATTATGAAAAATCGATGCACAAACTTTGTGGAGGGGATTATATATATATAAACATATATATAAATGAGAAGCAATTGAAGATTTTGTTTAAAATAACCTCAATGTTTCTATTTGGCTATTTGGTTTCGAATTCTGCTGAAAATATGAAAATAAAATGTTCTATTTGTGATAAAGGATTTGCCCAGAAAAGGAATCTATACGTTCATTTACGTAATGTTCATGAAATTGAACCACTGGAGTGCAAATTAGAGCCAACATTTGAATGTGTAAACTGTGATAAAAAATTCATTTATCAGTCATCTCTAACGAGACACATAAAAAAATTCCACTCGTCCAATAACGAGCATAATTACTGTCGTGAACCGTCATCAAAAGGAATCAGACTGATATGTCCACAAGATGATTGTAGTGGAAGATTCTTAAAATACGTTCAGTTGCGTCAACACTTGATTGAACAACATGACGTTAATATCGAAGTTGAAGATTGGACGTTTTATTCTATTGAAGACTTTGAAAGATGGAAAGATGAAATTCAAAACGACACCCAGTCTCTTTACACGCTAGATACAGGAATAAGACCGTTGTTAAATGGAACATGTAAAAAAACCTACAATTGCCATAGATCATATACCTATAAAAGCAAAGGTAGAAATATTCGAGCTTCAAAGTCCACTCTGACTAACAAGATAGGTAAAGCTTGTCCATCAAGAATTGAAGTAACTTTCCAAAACGATGAGCTATCAACAATATCTGTTAAGTTTTGGAAAACCCATTGTGGTCATTCGGATCGAATTGGAATAATGACTTGTAAAACAGTCAACGGTAGAATTGAATGTGAAGCCTGCAAAATGATTTTCTTTATGCGTCATCATTTCGAAAATCACGTTTGCAACGTAAAACTAAAAAGGCCCAAAAAAATATCGTGTTCGATCtgtaagaagacattcacatcaaggtttaacttgaagcggcattcctatcttcatacggtggaaaaatcgtacgagtgtcatatttgcagaaagcgatttattcacaaaaagtacgttgccaaacatctcctaactcatgccaatgaaaagcagttcaagtgcaaaatgtgcgataaatcgtacgcccaatctgaacatctcaaagaacacctgaagacccacgagggcgagaaaccctttaaatgtgactattgcggtaaaaagtttaccagaaaacATTCCGTTTTCGTCCATATTAAATGCGTACATAAACAAGACTCGTACAATTTAGAAAAGTGTCACCTTTGTAACAAACAATTCTGGTACAAGTCTCAGTTAGTACAACATATACAAACACACAAAGGTGAGTGCGACCGTCGTATGAAATTATCAAAAACAACAAACACTACTCAGATCAGTAAGGGACCTTCAACCAGCTTTGCGTATCTGTCAATAGGGGAAACAGTCGAATCTGAGAATAAAGTTAAAAAGGACGACATGTTTTCTCCAGTTAATGAAGCTATTTTGATGTTTGAGAAGAAGTCAGTAGAATTAGGTGATATAATTATACCAAAAGAAGAACTTAAAGACGAATATTTCGAAATCGACGACAACTCCATGGAAGCTTTTGCTTATTTTACTACTGAAGTCGATGAAGACAACAAGGATTTTTATATCAAAGAAGAATCCATAGAGTTCTAA
Protein Sequence: MDYEKSMHKLCGGDYIYINIYINEKQLKILFKITSMFLFGYLVSNSAENMKIKCSICDKGFAQKRNLYVHLRNVHEIEPLECKLEPTFECVNCDKKFIYQSSLTRHIKKFHSSNNEHNYCREPSSKGIRLICPQDDCSGRFLKYVQLRQHLIEQHDVNIEVEDWTFYSIEDFERWKDEIQNDTQSLYTLDTGIRPLLNGTCKKTYNCHRSYTYKSKGRNIRASKSTLTNKIGKACPSRIEVTFQNDELSTISVKFWKTHCGHSDRIGIMTCKTVNGRIECEACKMIFFMRHHFENHVCNVKLKRPKKISCSICKKTFTSRFNLKRHSYLHTVEKSYECHICRKRFIHKKYVAKHLLTHANEKQFKCKMCDKSYAQSEHLKEHLKTHEGEKPFKCDYCGKKFTRKHSVFVHIKCVHKQDSYNLEKCHLCNKQFWYKSQLVQHIQTHKGECDRRMKLSKTTNTTQISKGPSTSFAYLSIGETVESENKVKKDDMFSPVNEAILMFEKKSVELGDIIIPKEELKDEYFEIDDNSMEAFAYFTTEVDEDNKDFYIKEESIEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -