Acya022845.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- -
- Assembly
- GCA_947389935.1
- Location
- OX376705.1:27116888-27119520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0036 0.89 11.6 0.8 1 18 128 145 128 145 0.92 2 13 0.0072 1.8 10.6 6.5 2 21 274 293 273 294 0.92 3 13 0.36 88 5.3 0.7 3 23 315 335 313 335 0.90 4 13 0.022 5.3 9.1 0.6 3 23 354 375 352 375 0.95 5 13 0.13 33 6.6 0.1 1 23 382 405 382 405 0.85 6 13 0.0091 2.3 10.3 0.0 1 23 414 436 414 436 0.89 7 13 0.00025 0.061 15.2 1.8 2 23 442 463 441 463 0.96 8 13 2e-05 0.005 18.6 0.7 1 23 468 491 468 491 0.93 9 13 0.00026 0.064 15.2 5.2 1 23 497 519 497 519 0.96 10 13 0.00026 0.063 15.2 2.1 1 23 525 547 525 547 0.98 11 13 0.00017 0.043 15.7 7.3 1 23 553 577 553 577 0.98 12 13 1.3e-05 0.0032 19.3 5.6 1 23 583 605 583 605 0.98 13 13 0.0037 0.92 11.5 5.0 6 23 616 633 611 633 0.92
Sequence Information
- Coding Sequence
- ATGGAAGAAACAATTACATTACCAAATGAAATTAACAGATTGTGCAGGACTTGTATGACAGTTGCTTCTGACGATCGAGAATTCTATCAAAATGCTTTATTTGAAGAGGAGTCTTGTCTCACTTCTTTGGGAATGATGCTTCAAGATTTGACTACATCTGAGATATCAAATGATGGGTTACCTACGGTTTTATGCGATTCTTGTGTCAGTCAACTAAAACAGGCTTATTACTATAAAAAACAATGTGATGAAGTTCAGTTGAATTTAAAGGAACTGTTGATTTTATTCGATGGCAAAGATGCAAATTGCAAAGATTTGGATGAGTTAAAATTAATAGAATCAGAAAATTTTAAATTTTCTTTTGCAGAGAGCACAAATGAGTTTGTATGCAATATATGTACAAAGACATTTGATTCAAGATACAAACTTAGTAGAGACATGATTGAACATAATAAAGATAAGAATCTGTTAGATAGATATCAGGAAAGTTCAGACGAAGATGTTAAAGCTAATTTACTGATAGACAGGGTCATTTCAGAAGACGTTTTAAATTTAGTACAAACTAGAAAGAACGAATGCAATCAAATTAACGACTCCGTTTTTGAAATAGAAATGATTGATAAAAATAATGGAGATCCTGATGAGGATATTGGTCAAGATCTAGAAATGGAAAGTGTTGATGGTTCAGGAAATTCTGGTAAATCTGTTGCTAAGAAAATTGTATTTCTTTCAAGTATTGATTCCATTAACAATGCGGAAATTATAAGAGCTGATCAAGTAACAAACGAAAACTTAGTCAAGAAAAATCTAGCTGCAATACCGTGTAAGCATTGCAATAAAAAGTTTTCAAACAAAAACAAATACAGATTGCATCACTGTATGAAGAAACAAGATAAAAATGACGAAGAACCGAAAAATAACTTGACAGAACATTCGACAAACTGTGACCTATGTAATAAATTGTTTCCAAACAGTGTAATGGTTTCTATACACTTTATACATCACGTACTTTTAGAGGAGAGTGTTAAAAACACTGAATTACTTCAAGAATGGTTATTTTGTAGCTTTTGTGGACAACTATTTCGAACCGAGGAAGGTATGGAAGAACACAGACAATCAAAGCATGATTGTCAGTCACTTAGTTTTCTTTGTGAACGATGCGGTATCTCATTCGGCAAAGATACGGATCTAATTCTTCACGAAGATCAAGACCATGCAGATTACAACGTGAAAGATTCTTACCAATGTCCTATATGTGGCGATTCCTTTGGAAGCAAACTGCTGCTTTTAGATCACGGTGTTAATCATTTAATGAAGAAAATATATTGTCGTGTTTGTCGATTAGAATTTTGCACTCAAGCAAGTCTTAACGAGCATATGAAAAGTCACCCACGATACAGGCATGTCTGTAATATTTGCGGTAAATGTTTAAGTAGTAGCGGAGCTCTAAAATCGCATGTGATGGGAATTCATAATCAGGATGCCCTGTTTATGTGTACAACATGTGGTAAATGTTTCAAGACGCCTAATCGCCTGTGCATCCATAAAGAAATTCACAGTGCAAATAAGAAATACATGTGCTCGTATTGCGGATATCGTTCCCATAAGAGTGGAGATTTGAAGCTTCACCTGCGAATTCATACTAGTGAACATCCATACAAATGTACCTTTGCCAATTGTAGTAGGATGTTTAAAACCTCCAGTCATTTCAATCAGCACATTCGTCATCATCTGGACATCAAACAATATCAATGTCCTTATTGTTCACGTAAATTTAGTCATAGTTACACCCTTAAATTACACAAAATGAGGCATACTGGGGAAAAACCTCACTCCTGTATCGCCTGTAACATGAAATTTCGAAGAAGAGATCACCTAAGAATCCACATGAAGCAACATAATAAATAA
- Protein Sequence
- MEETITLPNEINRLCRTCMTVASDDREFYQNALFEEESCLTSLGMMLQDLTTSEISNDGLPTVLCDSCVSQLKQAYYYKKQCDEVQLNLKELLILFDGKDANCKDLDELKLIESENFKFSFAESTNEFVCNICTKTFDSRYKLSRDMIEHNKDKNLLDRYQESSDEDVKANLLIDRVISEDVLNLVQTRKNECNQINDSVFEIEMIDKNNGDPDEDIGQDLEMESVDGSGNSGKSVAKKIVFLSSIDSINNAEIIRADQVTNENLVKKNLAAIPCKHCNKKFSNKNKYRLHHCMKKQDKNDEEPKNNLTEHSTNCDLCNKLFPNSVMVSIHFIHHVLLEESVKNTELLQEWLFCSFCGQLFRTEEGMEEHRQSKHDCQSLSFLCERCGISFGKDTDLILHEDQDHADYNVKDSYQCPICGDSFGSKLLLLDHGVNHLMKKIYCRVCRLEFCTQASLNEHMKSHPRYRHVCNICGKCLSSSGALKSHVMGIHNQDALFMCTTCGKCFKTPNRLCIHKEIHSANKKYMCSYCGYRSHKSGDLKLHLRIHTSEHPYKCTFANCSRMFKTSSHFNQHIRHHLDIKQYQCPYCSRKFSHSYTLKLHKMRHTGEKPHSCIACNMKFRRRDHLRIHMKQHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -