Basic Information

Insect: Agrilus cyanescens
Gene Symbol: RREB1_1
Assembly: GCA_947389935.1
Location: OX376706.1:21281776-21286796[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.5e-06 0.0016 20.2 1.7 1 23 100 122 100 122 0.98

2 16 0.00096 0.24 13.4 0.7 1 23 135 157 135 157 0.97

3 16 2.2e-05 0.0054 18.5 4.4 1 23 163 185 163 185 0.99

4 16 5.1 1.3e+03 1.6 0.1 1 21 263 284 263 287 0.73

5 16 0.03 7.3 8.7 2.1 2 23 293 315 292 315 0.94

6 16 0.55 1.4e+02 4.7 2.5 1 20 363 382 363 384 0.88

7 16 0.055 14 7.8 0.1 1 23 527 549 527 549 0.96

8 16 2e-05 0.005 18.7 1.0 1 23 558 580 558 580 0.99

9 16 0.00063 0.16 13.9 3.1 1 23 586 609 586 609 0.97

10 16 0.00054 0.13 14.2 2.8 1 23 1030 1053 1030 1053 0.96

11 16 0.00026 0.064 15.2 0.4 2 23 1280 1301 1279 1301 0.97

12 16 0.095 24 7.1 6.3 1 23 1307 1330 1307 1330 0.97

13 16 0.0095 2.3 10.2 1.2 1 20 1359 1379 1359 1380 0.95

14 16 0.082 20 7.3 1.7 1 23 1450 1473 1450 1473 0.94

15 16 0.013 3.1 9.9 0.4 3 23 1519 1539 1517 1539 0.93

16 16 0.0023 0.57 12.2 5.6 1 23 1545 1567 1545 1567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.5e-06	0.0016	20.2	1.7	1	23	100	122	100	122	0.98
2	16	0.00096	0.24	13.4	0.7	1	23	135	157	135	157	0.97
3	16	2.2e-05	0.0054	18.5	4.4	1	23	163	185	163	185	0.99
4	16	5.1	1.3e+03	1.6	0.1	1	21	263	284	263	287	0.73
5	16	0.03	7.3	8.7	2.1	2	23	293	315	292	315	0.94
6	16	0.55	1.4e+02	4.7	2.5	1	20	363	382	363	384	0.88
7	16	0.055	14	7.8	0.1	1	23	527	549	527	549	0.96
8	16	2e-05	0.005	18.7	1.0	1	23	558	580	558	580	0.99
9	16	0.00063	0.16	13.9	3.1	1	23	586	609	586	609	0.97
10	16	0.00054	0.13	14.2	2.8	1	23	1030	1053	1030	1053	0.96
11	16	0.00026	0.064	15.2	0.4	2	23	1280	1301	1279	1301	0.97
12	16	0.095	24	7.1	6.3	1	23	1307	1330	1307	1330	0.97
13	16	0.0095	2.3	10.2	1.2	1	20	1359	1379	1359	1380	0.95
14	16	0.082	20	7.3	1.7	1	23	1450	1473	1450	1473	0.94
15	16	0.013	3.1	9.9	0.4	3	23	1519	1539	1517	1539	0.93
16	16	0.0023	0.57	12.2	5.6	1	23	1545	1567	1545	1567	0.98

Sequence Information

Coding Sequence: ATGAGCTATATTTTAATTATTATTAAAGAAAATCAAACATCCAGATATGCTCCATTTTTTCATCTAAAATTAATACTCAAAATATTCTCCATTTCTCTTCCAGATTCCAATCATATAATGGACATATCGTTACATCCAAATTTATTAAATAAGGACCTATTGTTAAATAAAACTAACCAAAGCGACTCAGGAATCCATTCCGCCACTGGAAATTCTTCACTGAGCGATGAAATTATGGATCAATCACAAAATTCCGATGTAGAAAATCGGAGCGAGAGCAGCTCACCCGAAAGAAAATACTTTTGCCCAATTTGTGAAACAGTTTTTACTTCTCAGCACGAATTTACCCTCCACATTCGCTCTCATAACAACGAATCAGAACCACAAGACTGCGAAAAGAACTACACTTGCCGAATTTGTTTCAAAGTGCTGAGTTCCAGTAGCAGTTTGGATCGACACAGTTTAATTCATAGTGGTGAAAGACCATTTACTTGTAAATTTTGTGGAGACACTTTTACAACAAATGGAAACATGCACCGTCACATGAGGACCCATTCTCAAAGAAACGACAGCTACGAATCGGACGCAAGCATAAGCAGCAATGATTCCAAAGGAATTGAATACAATAATAATAAAATTACTAACAAAACCGATAGTTTAAAAGAGCCGACTGAAGATAATAACAACGAAAATAAACGTATATACGGTGATGATAAATATAACAACCCCAAAAGAATAGCCAAGGAAGAACCGCAAGATCTCAGCAATCGTAATCAGTTGCAAAATTATCAATGTTCTGTATGCGAAAGGAACGATTTTACGTCAATAAATGCACTCGAAATGCATTTGGAGGATAACCATAAAAATTATTTAACAACGTGTAAACTGTGTAATCAAAATTTTAAGAACAACAAACTTTTAAACTTTCACTATAAAATAGCACATCAGCTGGAAGAAACTGAAAAAGCACCCTCTGTTGTTGGATTTAAGGATCTTACATTTGTTGACTTTTCTAGCGAAAAATTTCCGTACATAGCCAAGTATGAGTGTGAGAAAAATCTTCATAAAGCATCAAGCGGTCCGAAATTTATTTGCAAAAATTGTGGTCGAGCTTTCCCTTGCTGCAATTCCCTTGAAATTCATAAAAAAGATTGTTTCGCTGGATTGGACTTATCCACTAACGGGAATAAACCCTTGAGCCAAGAAAAAAGTATTTCCGAAGAAAGAGACGCAAAGAGGGTTGAATTCTTTGCACGCTTAGATTTACATTCCAACTCTCCCAATCAAACTAACGATGACATTCCGCCAGAGACAATTGACGTAAAAGAAAAACTACAAAAGCATCTTTTACAGTCCATGGAAGGAACTAAAGATCTTGCCGATATACAATCAATAATATCTATGACAACGTGCGGAAGTCTTCTGCAGCACTTACAAACAAAAACAAATGAAATCCCTCTTTTACCTTTACCAAATTTCTTAGAAAGGAAATCTAATGAACCTCAAAAGCATGAAAATGAAGAAGAATCACAAGACGCCTTTGCTGCAGAATTTCGAAAGATGAAACTCAGGGGCGAATTTCCCTGTCGACTATGTACAGCAGTTTTCCCTAATCTACGTGCCCTCAAAGGTCATAACAGAGCTCATTTAAACAGTAATAATAACGGTACGTATCGGTGTAACATGTGTCCACATTCATCCATGGATAAAGCAGCTCTTATTCGTCACATGAGAACTCACAATGGAGACAGACCTTACGAATGTTCGCTTTGTAATTATGCCTTTACAACTAAAGCAAACTGCGAAAGGCATTTAAGAAACAGACATGCAAAGAGCACTAGAGAAGAAGTGAAAAAGTCCATTATTTATCATCCATCTGAAGACCCTAGCAACGACGAAATTACTAAAATGTTAACTCGAGAAGAAGCTAAGAAAATTAATTCTAATAACGACATAGGAATTACTGTTAATGATAATGCTAAAAGTAGCAGTAGTCCTAAGAGTTTTAATACTCGCGATAGACATAATTTTGTTTCTGAAAATTTTTCTTTTAATAATCGAATACCACCTAGTCACAATTTACCTATAACAGCCAATTTTTTGTCACTGAAGAACAGTCTTCAATTAAAAAAGTTTAACGATGAAGCTGCTATCGCTACCAATGATGAAGTTATACGAAGTTCTACAGATATAAAAAATAAAAAAGAATTTATGTCGCCATACCTTACTCATTCGTTAAAATTTTCGCCAAAAATTGAAAATATTTCCACACCGCAGTCAACCCCAAAGTTGCAAGTGAAAAAATTAGAAACGCTTAAGGAAACCATTGTAGAAGACAATTTAATTAATAATCTTGAAAGCAACCGAGACTACAATGTCGATAACGATGAATCGATGAATTACGTTCTAGACCTAAGTAAGAAAAAAACTTCAAAGGAAGAAGAAAATTTGAAAAGCCTGGAAGACTTGCCACAAGATTTGACAAAAAAATCGGACGCAGAAGACAAACACAACGTTAGTGATATTTTAACACAGCAGTTACTTAAAAATACTCCAAAAATAGACCCGCTATATGCATCCCAATTGGCATTCTACAGGAATAGTTTTCATGGTTTATCAAGTTTTCCATATTGGCCATTAACTTGTAATCCCCTGCTTTTTTCATCGGTGCAAGCTCCGATTTTCCCTCAAAACCCACAAGACATTAAAGATCGACTTCAAAGACTTCAGTTTTGCAGTGGCGGCATGATTATGGATAATTTTAAAGAAAGGCTGAAACACATGCACCATGTGACACTTCCGAATCTTAGCTCTCATAGTTCAAATAAAAATGAACAAACCCCAGAAATGACTAAATCATCTGAATCTAGTATTATAAATTCTAATTCTTCCGAAAATATGGAGAAACCTTCATTAAATATTAGTTTAGAGGCCAATTATCCAGAAAGTATTCCCAACGTTCGAAGTCCTGTTTCTTCCCATCCTAAATCTGAAATTGTTCATTCGTCTAACTCTGTAAAAATGGTGATTAAAAATGGAATTTTAATGCCAAAACAAAAACAGAGACGTTATCGAACTGAGAGACCATTTTCATGTGAGCACTGTTCCGCCAGATTTACTCTTAGATCGAACATGGAGAGACATATAAAGCAACAGCATCCCCAGTTTTGGTCTCAACGACAACGATCTAGTTTAAATACATTAGGGAGAAAAGGGCAAACATCCAATTCAAAAGACAGTCTCTGTAACATCAACATTCCTACATATCATTTGCCAAAATCATCTGAGCTTCCTGAAAGCAAAAGCCACAAAATTTCAGAAAAAATCAAATATGCTATTTTGGCCCAACATTTAAAATCAACACATGAATCAAACCCGTATTTGCTAGAAACGCAAACGAAAGAGGACGATGATGACTGTGAATTGGTGATAGACGAAAATGATGACAGTAGTTTTAAGAATAGTAATAATGAATATATGAAATCATCAAAAGATCGTGCAGACGATAATACTTCGTTAGGGGAAGATTCAAAATCTGGTCTTCTCCAAGACAATTCAAAACCAGCGTATAAGAATGAAGATAGTCATGATTTGGTACCTGTTTCACGTCTTCTTGACAATGCATCCCAACAGCCATTTAAAGATTATTTCATTAGAGAAAATGAAGAGCATGATGACGGGAATAGTGAGGAAGAAGAAGAAGGTCTAGTAGCTAGCAGTAGCACTAGCGAAGAAAATAATTCCGGAACTGATGAGAACAGGTCTGAATCTGAAAATACCGTTAACCGCCAACCGCCAAAAAAAAAGTCCGCTTATTCTTTAGCTCCAAATAGAGTAAGTTGTCCGTATTGTCAACGAAAGTTTCCATGGACATCCTCATTACGACGTCACATCCTTACTCATACTGGACAAAAACCTTTCAAATGTAGTCACTGTCCTCTTTTGTTTACTACAAAATCAAATTGTGACCGACATTTACTACGTAAACATGGTAATTCTGCTACTACGATTACTAATGCGGCAGATAACACCCAAACACCAAATTATTTAATGCGAAACGTTCCTGAACGTCCTTTTAAATGTTCCAATTGCCCTAGTAGCACCTTCTCCACATATTCGAATCTTAAAAAACACATCAGCTGCAAGCATTCGACCCCCAGTTCTCAAAGTGACGATGCTCGTTCCCAAGTATCAACTGGGTATGAAGCAGGCAGTTCTGAAGACGAAAAACAGCTAAGTAATGGAAATCAGACTGATTGGGACAAACAAGTTTCACAAAACAGAATAAATGTTTCCAATGGAAGCGTTGAAATTCAAAATCCTCACGTTCAAAACTCAGAACTGCCATTTAAGTGTCACTTGTGTGATAATTCCTTTGCTGAACGCCAAGATACTCTGGATCATATTAAAGACAAACACATATCAGAATATGAGTTACTTATGTCAAAAAATGCATTAGAAAGTCACTTAACAATGGAAGATAGCGCTCATCAATACGAAGATGATAATGAAGTTCGAGGAAAATTTCCCGATTATACAAATCGAAAAGTAATTTGTGCTTTTTGTATGCGTCGATTTTGGTCTGCTGAAGATTTACGACGACATATGAGAACACACACTGGCGAAAGACCGTTTAGCTGTGACATTTGCCAAAGAAGATTTACATTAAAACATAGCATGTTAAGACATCGAAAGAAACATAATGTTGCGTTCGAGAATGATACTCTAAATAGTGACGAAGATATTAATAATCCTGTATTACATGAAAAAATAACCAAACTGAACAGACTTAAATCTATCGAAAAAACTGACGATTCTGATGGAGCTGAAGGCAGCGACCTTATCAGTAATCTATTGGGAATACGAGATCGATCAATCATTGATCAAGTACTAACTGCATCTGCCGATGATGCTGCTAAACTTTTGGGTGTTAAAAGTGGTGCTCCGGAATAG
Protein Sequence: MSYILIIIKENQTSRYAPFFHLKLILKIFSISLPDSNHIMDISLHPNLLNKDLLLNKTNQSDSGIHSATGNSSLSDEIMDQSQNSDVENRSESSSPERKYFCPICETVFTSQHEFTLHIRSHNNESEPQDCEKNYTCRICFKVLSSSSSLDRHSLIHSGERPFTCKFCGDTFTTNGNMHRHMRTHSQRNDSYESDASISSNDSKGIEYNNNKITNKTDSLKEPTEDNNNENKRIYGDDKYNNPKRIAKEEPQDLSNRNQLQNYQCSVCERNDFTSINALEMHLEDNHKNYLTTCKLCNQNFKNNKLLNFHYKIAHQLEETEKAPSVVGFKDLTFVDFSSEKFPYIAKYECEKNLHKASSGPKFICKNCGRAFPCCNSLEIHKKDCFAGLDLSTNGNKPLSQEKSISEERDAKRVEFFARLDLHSNSPNQTNDDIPPETIDVKEKLQKHLLQSMEGTKDLADIQSIISMTTCGSLLQHLQTKTNEIPLLPLPNFLERKSNEPQKHENEEESQDAFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNSNNNGTYRCNMCPHSSMDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKSTREEVKKSIIYHPSEDPSNDEITKMLTREEAKKINSNNDIGITVNDNAKSSSSPKSFNTRDRHNFVSENFSFNNRIPPSHNLPITANFLSLKNSLQLKKFNDEAAIATNDEVIRSSTDIKNKKEFMSPYLTHSLKFSPKIENISTPQSTPKLQVKKLETLKETIVEDNLINNLESNRDYNVDNDESMNYVLDLSKKKTSKEEENLKSLEDLPQDLTKKSDAEDKHNVSDILTQQLLKNTPKIDPLYASQLAFYRNSFHGLSSFPYWPLTCNPLLFSSVQAPIFPQNPQDIKDRLQRLQFCSGGMIMDNFKERLKHMHHVTLPNLSSHSSNKNEQTPEMTKSSESSIINSNSSENMEKPSLNISLEANYPESIPNVRSPVSSHPKSEIVHSSNSVKMVIKNGILMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRSSLNTLGRKGQTSNSKDSLCNINIPTYHLPKSSELPESKSHKISEKIKYAILAQHLKSTHESNPYLLETQTKEDDDDCELVIDENDDSSFKNSNNEYMKSSKDRADDNTSLGEDSKSGLLQDNSKPAYKNEDSHDLVPVSRLLDNASQQPFKDYFIRENEEHDDGNSEEEEEGLVASSSTSEENNSGTDENRSESENTVNRQPPKKKSAYSLAPNRVSCPYCQRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTITNAADNTQTPNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTPSSQSDDARSQVSTGYEAGSSEDEKQLSNGNQTDWDKQVSQNRINVSNGSVEIQNPHVQNSELPFKCHLCDNSFAERQDTLDHIKDKHISEYELLMSKNALESHLTMEDSAHQYEDDNEVRGKFPDYTNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICQRRFTLKHSMLRHRKKHNVAFENDTLNSDEDINNPVLHEKITKLNRLKSIEKTDDSDGAEGSDLISNLLGIRDRSIIDQVLTASADDAAKLLGVKSGAPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030474;
90% Identity: iTF_00030474;
80% Identity: -