Acya046865.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- -
- Assembly
- GCA_947389935.1
- Location
- OX376704.1:34634483-34635901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.32 13.0 2.3 2 21 32 51 31 52 0.94 2 10 0.00029 0.071 15.0 5.1 3 23 60 80 59 80 0.98 3 10 2.8e-05 0.0069 18.2 5.2 1 23 86 108 86 108 0.98 4 10 1.3e-06 0.00031 22.4 0.7 1 23 114 136 114 136 0.98 5 10 1.3e-06 0.00032 22.4 1.6 1 23 142 164 142 164 0.99 6 10 7.1e-05 0.018 16.9 1.1 1 23 170 193 170 193 0.94 7 10 9.9e-07 0.00024 22.8 2.3 1 23 199 221 199 221 0.98 8 10 1.7e-05 0.0042 18.9 0.2 3 23 229 250 227 250 0.93 9 10 0.00012 0.03 16.2 6.5 2 23 259 280 259 280 0.98 10 10 0.00036 0.088 14.7 1.5 1 23 320 342 320 342 0.99
Sequence Information
- Coding Sequence
- ATGTCCAACCAAAAAAATACTACATCGTTCCAATCGGCATTTATGAAAGCAGTTGAGGTAATGAATCCAGTGGCGACTAAACGAATGCAAATTCAGTGTGAAACATGTGAGAGAATCTTCACTCAAACCAGCCACTTTGAGAGTCACCTTTGCAACCAGAAACCCAGAGAGGTAGCATGCGAAAtttgccataaaatgttttactctaaatgccgtttaaagcaacatttgcgagttcattatggggagaaaccgttcgagtgtcatatttgtaaaaagacatttccccataaaaactacatgaccgaacatctcctaactcatactgaggataagtcatttaagtgcaatatctgcgacaaatcttatataaaagctgaaacactcaaagagcacatatacactcacacaggaaagagaacgtacaaatgtgaACATTGCAACAAGGAATTTGGAGTACTGTCGAATTTGAGGGCGCATCTTACTACCCACCAAAGCACGAAGACTTACGAATGCGAATTTTGCCCACTTGTATGCTCcacgaggtacaatttaaaagaccatctattagcgacccacgaagaagcaaaaccatttaaatgtgacacttgcggaaaacgcttcgcgctaaaaagcaccttgaaaagacattccatgacccatttgggggagaaaccgtttggatgtgatcaatgcgataaagcatttacacgaaaagattacctttccgcccatgtcgaatatgtacacaaaaaTGATTCGCGCATTTTCGAAAAGTGTCACATTTGTAACAAACGGTTTATGTTCAAATCTCGTTTTCAGAAACACATGAAGATTCATTCTAGACTGGGTTGTCTGTTTTGTGCTAAACCAACCGAAGAATGCGTTTGTTCCAAAACCCCAGGGGATGACAGAAGGGACCCTCTAAGAGACCCCCGTGCTAAAGACGATTTTATGTTCAAGTGCCAAACGTGTTCCAAAATTGTTTTGCGCAAATCCCAGCTCAACACGCATTTGCGAATACATCGCGATTACGAATGTATAATTTGCAAAGAGGATTATAGAAAGTGCAGGTGCACCGATGATCATATGGAAGTGTCGAAAAGCAAAAACACTTATAAGAAGAATAATAAATCTTTTACCAACGCTGAGGAGCAGCAGGTAGCAGAAGGAACTGATGAACCTGGTGTTGAAGTTAAGGAAGAAGATACGGTCATTCGAGATAACGAACTAGTGGTTAAAAGTGAAAACAAATTAATCGAACAAAGTGAAATTGTTATACCTAAAGAAGAACCCAAGGATGAGTATTTTGAAATCGACGAAAACTCCGTCGAACCTTTCGTTTATCTCACTGCGGAAGTCGATGTAGATATAGGCAATGAGATATCAAACGTCAAAGAAGAATCCATAGAGTTCTAA
- Protein Sequence
- MSNQKNTTSFQSAFMKAVEVMNPVATKRMQIQCETCERIFTQTSHFESHLCNQKPREVACEICHKMFYSKCRLKQHLRVHYGEKPFECHICKKTFPHKNYMTEHLLTHTEDKSFKCNICDKSYIKAETLKEHIYTHTGKRTYKCEHCNKEFGVLSNLRAHLTTHQSTKTYECEFCPLVCSTRYNLKDHLLATHEEAKPFKCDTCGKRFALKSTLKRHSMTHLGEKPFGCDQCDKAFTRKDYLSAHVEYVHKNDSRIFEKCHICNKRFMFKSRFQKHMKIHSRLGCLFCAKPTEECVCSKTPGDDRRDPLRDPRAKDDFMFKCQTCSKIVLRKSQLNTHLRIHRDYECIICKEDYRKCRCTDDHMEVSKSKNTYKKNNKSFTNAEEQQVAEGTDEPGVEVKEEDTVIRDNELVVKSENKLIEQSEIVIPKEEPKDEYFEIDENSVEPFVYLTAEVDVDIGNEISNVKEESIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -