Basic Information

Insect: Agrilus cyanescens
Gene Symbol: -
Assembly: GCA_947389935.1
Location: OX376712.1:3437419-3439472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0012 0.28 13.1 1.5 1 23 140 163 140 163 0.98

2 16 0.012 3 9.9 1.8 1 23 169 191 169 191 0.97

3 16 0.0012 0.3 13.1 0.3 1 23 197 220 197 220 0.94

4 16 0.0023 0.56 12.2 5.0 1 23 228 250 228 251 0.94

5 16 1.9 4.7e+02 3.0 9.5 1 23 258 281 258 281 0.97

6 16 0.00046 0.11 14.4 0.2 2 23 290 312 290 312 0.93

7 16 0.00047 0.12 14.3 0.4 1 19 328 346 328 349 0.95

8 16 0.18 45 6.2 0.3 2 23 394 416 393 416 0.90

9 16 0.0025 0.61 12.1 2.2 1 23 426 448 426 448 0.98

10 16 0.00059 0.15 14.0 2.7 1 23 454 476 454 476 0.96

11 16 2.7e-05 0.0066 18.3 1.2 2 23 483 505 482 505 0.96

12 16 3.1e-06 0.00076 21.2 0.3 1 23 513 535 513 535 0.99

13 16 6.1e-05 0.015 17.1 2.2 1 23 541 563 541 563 0.96

14 16 2.1e-05 0.0051 18.6 0.9 1 23 569 592 569 592 0.98

15 16 0.00024 0.06 15.3 2.0 3 23 608 628 606 628 0.97

16 16 4.5e-05 0.011 17.6 3.6 1 23 634 657 634 657 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0012	0.28	13.1	1.5	1	23	140	163	140	163	0.98
2	16	0.012	3	9.9	1.8	1	23	169	191	169	191	0.97
3	16	0.0012	0.3	13.1	0.3	1	23	197	220	197	220	0.94
4	16	0.0023	0.56	12.2	5.0	1	23	228	250	228	251	0.94
5	16	1.9	4.7e+02	3.0	9.5	1	23	258	281	258	281	0.97
6	16	0.00046	0.11	14.4	0.2	2	23	290	312	290	312	0.93
7	16	0.00047	0.12	14.3	0.4	1	19	328	346	328	349	0.95
8	16	0.18	45	6.2	0.3	2	23	394	416	393	416	0.90
9	16	0.0025	0.61	12.1	2.2	1	23	426	448	426	448	0.98
10	16	0.00059	0.15	14.0	2.7	1	23	454	476	454	476	0.96
11	16	2.7e-05	0.0066	18.3	1.2	2	23	483	505	482	505	0.96
12	16	3.1e-06	0.00076	21.2	0.3	1	23	513	535	513	535	0.99
13	16	6.1e-05	0.015	17.1	2.2	1	23	541	563	541	563	0.96
14	16	2.1e-05	0.0051	18.6	0.9	1	23	569	592	569	592	0.98
15	16	0.00024	0.06	15.3	2.0	3	23	608	628	606	628	0.97
16	16	4.5e-05	0.011	17.6	3.6	1	23	634	657	634	657	0.97

Sequence Information

Coding Sequence: ATGCGAATTGTAAACGAAGAAGTGTGTTTTACATGCCTAAAAGAAAATATTCAGCTAATAAGCACTCTCGAAATAGATTCGAATAGCGTAGACATTACAAGTAAATTAAAATTTTGTGTCCCCGAAGTGGAATGGACAAAAGGATACATTTGTACCACGTGTGCGGATTTATTGAATCAGCTACATTTATTCAAACAACAATGTCTAAAGTCAAACGAAATTCTCACTCAAGAACATGAAAGAAATCTGACAGAAAATCTGAAAAGTGAAGACACTAAGCATTCCGAACATGAAGAACAACCCAGTGACGACGAATCTTTAGAAGATTCAGCAGCGAATTTTGACACTGAAGACTTAGAAGAAGAAACCAACAGTGGTAACGAAACAGACCCTCTGCACTCATCTGCATTGTCAGAATACAAATGTAACGTTTGTGAAGATTCATTCGAAGATCGCAAATTACTGTTCAATCACAAGAAGAAGGTACACAAAGAAGAACGTCCCTTTAATTGCCTCTTCTGTGAGCGGCTCTTCGATCACACTGGAGAACTGAAACGCCACGAACAGGTGCATCTAAACCAGAGGAACTTCACGTGCGACATCTGCAATAAATCTTACAACACCGCAGTGATCCTTTCGAAACACAAACTCGTCGTTCATACAGAACAAGAAGAATGGAAGCACATCTGCGAACATTGCAACAAGAAATATCCAATTAAATCGAGCCTGGACCAGCACATACTGAGACATCACACAAATGCAAGCGACACTTTTATCTGCTATCATTGCAACGAATGCCACAACACCAGGAACTCGCTCATCCACCACATCAAATCCAAGCACACGATGAGAGTGTTACGCACTGAAGAATGTGAAGTATGCAAGCAACCTTTCGACGACCAGACGCTCCTGAAAGACCACATGTTCAACGAACACAACGTCCGGATGAACATCAGATCGTGTGCGAAACGAACTAAACAGTTTTCGTGCGACAAGTGCGAAAAAAGCTACACGACAGCTCAAATGCTCAAGATCCACTCGACAAATTGCAGTGGCATCAAAAGGCATACCAAAAAGAAAACTGAAGAAATTGCTAGTTTTAACGATGAGCAAAACGATTTCCTAGAGTGTCAACAAAAGGTCCAACTACAAGGCAAAAAGCAGAGAAAAGTGAGCCTCAAATGCGAACTCTGCAACGAATTCACGGGGACGTACAAGAAACTGATGGCCCACGTGACTGCCAACCACGACATCGACCCCGAAACTTTGCGACCTTACGAATGCGTCCAGTGCAAAACGAAGTACAAATCTTCGCTACAACTGGCCAATCATAAGCGTTACCATTCGACAGAGAAAATCCATATGTGCAGCTTTTGCGGCCGGGGATTCACTCAAAAGAAAGACATGCTCAACCACGAGAAATTACACTCAGATCGAAGAGACGTCCAGTGCGAGATGTGTCCTAAAAGGTTCCACACGAAAAATTATCTACGGTCGCACATACTCGTCGTTCACACTGACCGCAGCTTATGGAAGTACACGTGTCCGTACTGCGGCCGAAAGTACGCCATGAAGTCGAATATTGACGCCcacattcgacgacacaccggggaaaaaccgttcgcatgtcatttgtgcgataaaaagttcgccgacaaggctgttctgcaacggcacttttacacgcactcgaacgtgcgaaatttcaaatgcgactattgcgaaaaagagtacaaaagtaacgacgtgttaaagatacatctgaagaaggctcacgacgttggaaacgcgaaagttcccattcctgttaaaaaattcggatgtgacttttgccagaaaatgttctcggccaaaaataaacttcgaagacacatgtattcgcatacgggggaattaccgttttcttgttacgtttgcgaaaaaaaattcacagaccgatcttatgttaaacatcatttacgatctgtacataacattcaagaagATAATCAAGATTAA
Protein Sequence: MRIVNEEVCFTCLKENIQLISTLEIDSNSVDITSKLKFCVPEVEWTKGYICTTCADLLNQLHLFKQQCLKSNEILTQEHERNLTENLKSEDTKHSEHEEQPSDDESLEDSAANFDTEDLEEETNSGNETDPLHSSALSEYKCNVCEDSFEDRKLLFNHKKKVHKEERPFNCLFCERLFDHTGELKRHEQVHLNQRNFTCDICNKSYNTAVILSKHKLVVHTEQEEWKHICEHCNKKYPIKSSLDQHILRHHTNASDTFICYHCNECHNTRNSLIHHIKSKHTMRVLRTEECEVCKQPFDDQTLLKDHMFNEHNVRMNIRSCAKRTKQFSCDKCEKSYTTAQMLKIHSTNCSGIKRHTKKKTEEIASFNDEQNDFLECQQKVQLQGKKQRKVSLKCELCNEFTGTYKKLMAHVTANHDIDPETLRPYECVQCKTKYKSSLQLANHKRYHSTEKIHMCSFCGRGFTQKKDMLNHEKLHSDRRDVQCEMCPKRFHTKNYLRSHILVVHTDRSLWKYTCPYCGRKYAMKSNIDAHIRRHTGEKPFACHLCDKKFADKAVLQRHFYTHSNVRNFKCDYCEKEYKSNDVLKIHLKKAHDVGNAKVPIPVKKFGCDFCQKMFSAKNKLRRHMYSHTGELPFSCYVCEKKFTDRSYVKHHLRSVHNIQEDNQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030436;
90% Identity: -
80% Identity: -