Basic Information

Insect: Agrilus cyanescens
Gene Symbol: -
Assembly: GCA_947389935.1
Location: OX376707.1:7706196-7709291[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.4e-06 0.0013 20.5 0.7 1 23 142 164 142 164 0.95

2 15 0.00093 0.23 13.4 1.2 3 23 172 192 171 192 0.99

3 15 0.00013 0.032 16.1 0.2 1 23 292 314 292 314 0.98

4 15 0.047 12 8.1 0.1 1 23 320 343 320 343 0.96

5 15 3.4e-07 8.4e-05 24.2 2.1 3 23 372 392 370 392 0.97

6 15 0.0032 0.79 11.7 0.0 1 23 405 427 405 427 0.95

7 15 0.58 1.4e+02 4.6 0.1 1 23 433 456 433 456 0.91

8 15 0.33 81 5.4 4.2 2 19 464 481 464 482 0.95

9 15 1.9e-05 0.0048 18.7 5.3 1 23 491 513 491 513 0.97

10 15 0.0019 0.47 12.4 0.3 2 23 519 540 518 540 0.97

11 15 6.7e-06 0.0017 20.2 0.4 1 23 548 570 548 570 0.98

12 15 0.0029 0.72 11.9 0.2 3 23 578 598 576 598 0.97

13 15 9.2e-05 0.023 16.6 0.3 1 23 604 626 604 627 0.95

14 15 0.022 5.4 9.1 1.6 1 23 641 663 641 663 0.96

15 15 0.00027 0.067 15.1 0.1 1 20 1008 1027 1008 1030 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.4e-06	0.0013	20.5	0.7	1	23	142	164	142	164	0.95
2	15	0.00093	0.23	13.4	1.2	3	23	172	192	171	192	0.99
3	15	0.00013	0.032	16.1	0.2	1	23	292	314	292	314	0.98
4	15	0.047	12	8.1	0.1	1	23	320	343	320	343	0.96
5	15	3.4e-07	8.4e-05	24.2	2.1	3	23	372	392	370	392	0.97
6	15	0.0032	0.79	11.7	0.0	1	23	405	427	405	427	0.95
7	15	0.58	1.4e+02	4.6	0.1	1	23	433	456	433	456	0.91
8	15	0.33	81	5.4	4.2	2	19	464	481	464	482	0.95
9	15	1.9e-05	0.0048	18.7	5.3	1	23	491	513	491	513	0.97
10	15	0.0019	0.47	12.4	0.3	2	23	519	540	518	540	0.97
11	15	6.7e-06	0.0017	20.2	0.4	1	23	548	570	548	570	0.98
12	15	0.0029	0.72	11.9	0.2	3	23	578	598	576	598	0.97
13	15	9.2e-05	0.023	16.6	0.3	1	23	604	626	604	627	0.95
14	15	0.022	5.4	9.1	1.6	1	23	641	663	641	663	0.96
15	15	0.00027	0.067	15.1	0.1	1	20	1008	1027	1008	1030	0.94

Sequence Information

Coding Sequence: ATGGAGGCTGGATTTACTTTGTCGTGGGAGGACCCATCGGCGGTGGTGCAAAATGAGGAAGTTATATGCGGCATGGACAATGAATGTACTATTTTAGCTTCGGACACAGCAGAGTATGATAATGTCTGTGAAGAAGTAATTGTTGAAGAGTCTCATGAAGAAATAATTGAACCTGAAGAGGGTGCCAATATTGTATATTTAACAAGCGACAATGTTCTTGTTATGCAACAACCAAACGAACAGTTCCAAGAACATTTCATGGAATGTCAGGTGACTGAAGAAATCGTTGGAGAACAGTGGAATGAAAATTGCCCAGAAATTATTGTTGGCTCTGAAGAACACGTCGGAAATGATGACCAGAGTACAGATGATATAGAAATACCTTTGCCAACAGATCAAGATCAGTATACAACATCACGACCATATCCTTGTGACTTTTGCAGTCGTCGGTTTCGAAGAAAAGCTAATTTAATGAATCACATGGTAGCCCATCAAACAGACCGACCTCATGGGTGTAATTTGTGTGGTGTCCGTTACATACGAAAATGTGATCTTATGAATCATCTTAAAATTCATGCCTATATACCAGATGATGGCATGGACGATGATGGATCTCAAACTGTCGATGATTCAGACACTGAACGATCACGAAAAGGCATACGAAGAAAGAGAATGAAAGATAAGATAAAAGACGAAATGGATACTGAAGTTGACAAATATGGCAATACTTCACGTTCATATGATTATGTTGATGAAGATATGAAACTTATGGAAGCGATGGAAAATTCCAGATCTGAATACAACGCTTTTCTTCCTGAAGACAATCACCCGATTTCTGAAACGAGATATCAAATTACGGATCCTAAAAAACCGTTTGTTTGTCAACATTGCGGTGTCGGTTTTGCGAGAGAGAAAGCACTCGCTTCACATTCTCGGGTCCACGGTGGAGATAGTCCGTTCGAGTGTCGCAGATGCGGTGAAGTATTTTGGGATGCAGCTTTGACCCGACAACATATACGTTTGAAACACGGCGGCGCAGAAGACAACCTGGAGGACGAAGATGATGACGAAGACTATTCCGAACCTGAAGAGACAAGATACGGTCAATGGTTTTGTCCGACATGCGGAATGGCTTTTCACAGACAAGACAATTTAAAAAGACACCAAAGAACGCATATTAAAGAAGAATTCAGTAATGAATCTGAATTCGGACACATCTGCAATGTTTGCGGCGAGTCTTTTCCCGAAGCGTTGGACCTTCTTGCACACGCCGAAGTTCACGCTCGAGGTTCTGAACATCGTTGTATGGTTTGCGGTGAATTATTTCCAGATGACCAATCAGTTGCTGCTCACGTTCAGGCTAAACATGGTAAAAGTCTACCGCCAAATACTTGCATGTTGTGCGGCCGCACTTGTAAAGACAGGTGCAGTCTCTTAAAACACTCCTGGGAACATTCACGAGAAAAATTGTTCTCTTGTTCCAAATGCGGCAAAAGTTTCCATAACAAAGCTCGATTGAAACGTCATATGTTTTCGCATAGAAGTAAAGCAGTCACGTGTGACGTATGTGGTGAAGAATTCCCAGACGGACGTTCCCTGATGAATCATAGACATAGTCACAGCAGCGTATCAGGTcgtcaatttccttgtcgtgagtgtggaaaaacatttggatccaggagttcccaacaaattcatataagaattcatacaggagaaagaccttacggctgtagattttgctggaaggctttcgctgacggcggtactttacgaaagcatgaacgtattcacactggagaaaagccgtacgcatgtgctgtttgtcccagagcttttaatcaaagAGTAGTTCTACGCGAACATATTCGCTCACATCACTCAGCTCCTGATCCAAATTACAGTCATAGTATGACTCCTTTTTGTTGTTCTGTTTGCTCTGACATGTTTTCTACTGCACAGGACCTCATAGTTCATCTTATACACCACTGCGACATGAATACTGCAATGAAACGACAACCTCAAGTGGGTCCCCGGAAATACAAAAGACGTCGTAAGCTAAAACCGCACGAATTAGAAGTTATGACCGATCTAATGCAAAAAAACAACGAGAATGATAACTTTAGTGGATCCGATGATGAGTTTAGAAAAAGAACAGTACCCATTATTAAAAAAACGAAAAATAAGACTCCACCTAAAACAAACATTGAAGAAAGCTATACCGAAGTATATAACAGTTTCACAACAGCAATAGAAAACATTAGCACTATAGTTAACTCCAAGCCTGTTAAACCGAAGAAAAAACTAAAGCCGGAATCCCAAATCGTTCCTTCTAGGCCTAAAATGATTCACACTCAAAAAACCAGAGTTCCCGTTGAGAGCGCAGAAGGCGGAAAAATGCGACATAAAACTCGCACGTTAATAACACACACTCAGCCTGCTGAATTAAAATCTGTTACAGGTGAAAGAATTAGACCACGTACTAAAAATGTCAGTTATCACATTCTACAATCGGAAAAACTCCCGGTTGCAACATTTCCTGAAGATGATACAGCCGAAGCAGTTAACAACCTATTGGCCATCGATCAGAACAGCAGTCATCATCATCACGATATTCTAACTGATTCAATCGAAAGCGATTTGGAACATATCCAAAGTAATGGTATTGTTCATGCTGTAGTGTCTACACCAGAAGTCGCATCTGAACAGACCGTGGAAACCGAAATTCCCGTACCAACTAATATAATAAAGGTCACAACTCGAAAGAAAAGTAACAGTAGCGTCAAGTTGAAACCCGGTAGAAACATCATTGGACCTGGTGGAAAAGTTGTGAGACTTGTTAAAGGCGGTATGATAGTATCTAAAACGAAACAAATTAAACAAGAACTGCAAGAACCAGAAAATATCATGGCCGATTATTCAACGGGGGATACCACCCATATGATTGAGATTAAAAAAGAAATAGAACCGAGTCCTCTACATGAACTGGCCGAACTTACGGTGCAACATGCTCAAAATATATTCAAATGTGAAATGTGCAGCGAAGTTTTTTCTGATCGTGAGCAACTTTTGGTGCATGTGCCCATTCACATCTGA
Protein Sequence: MEAGFTLSWEDPSAVVQNEEVICGMDNECTILASDTAEYDNVCEEVIVEESHEEIIEPEEGANIVYLTSDNVLVMQQPNEQFQEHFMECQVTEEIVGEQWNENCPEIIVGSEEHVGNDDQSTDDIEIPLPTDQDQYTTSRPYPCDFCSRRFRRKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPDDGMDDDGSQTVDDSDTERSRKGIRRKRMKDKIKDEMDTEVDKYGNTSRSYDYVDEDMKLMEAMENSRSEYNAFLPEDNHPISETRYQITDPKKPFVCQHCGVGFAREKALASHSRVHGGDSPFECRRCGEVFWDAALTRQHIRLKHGGAEDNLEDEDDDEDYSEPEETRYGQWFCPTCGMAFHRQDNLKRHQRTHIKEEFSNESEFGHICNVCGESFPEALDLLAHAEVHARGSEHRCMVCGELFPDDQSVAAHVQAKHGKSLPPNTCMLCGRTCKDRCSLLKHSWEHSREKLFSCSKCGKSFHNKARLKRHMFSHRSKAVTCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSAPDPNYSHSMTPFCCSVCSDMFSTAQDLIVHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEVMTDLMQKNNENDNFSGSDDEFRKRTVPIIKKTKNKTPPKTNIEESYTEVYNSFTTAIENISTIVNSKPVKPKKKLKPESQIVPSRPKMIHTQKTRVPVESAEGGKMRHKTRTLITHTQPAELKSVTGERIRPRTKNVSYHILQSEKLPVATFPEDDTAEAVNNLLAIDQNSSHHHHDILTDSIESDLEHIQSNGIVHAVVSTPEVASEQTVETEIPVPTNIIKVTTRKKSNSSVKLKPGRNIIGPGGKVVRLVKGGMIVSKTKQIKQELQEPENIMADYSTGDTTHMIEIKKEIEPSPLHELAELTVQHAQNIFKCEMCSEVFSDREQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030420;
90% Identity: iTF_00032247;
80% Identity: -