Basic Information

Insect: Agrilus cyanescens
Gene Symbol: Plod3
Assembly: GCA_947389935.1
Location: OX376705.1:7937377-7954070[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.2e-05 0.015 17.1 1.0 1 23 173 195 173 195 0.98

2 11 9.3e-06 0.0023 19.7 4.8 1 23 201 223 201 223 0.98

3 11 9.9e-08 2.5e-05 25.9 1.9 3 23 231 251 229 251 0.96

4 11 0.00015 0.038 15.9 0.2 3 23 259 279 257 279 0.98

5 11 0.00045 0.11 14.4 2.1 1 23 285 307 285 307 0.96

6 11 0.00016 0.04 15.8 1.3 1 23 313 335 313 335 0.98

7 11 2.4e-08 5.8e-06 27.9 0.7 1 23 341 363 341 363 0.97

8 11 2.4e-06 0.00059 21.6 0.9 1 23 369 391 369 391 0.98

9 11 1.2e-06 0.0003 22.5 1.5 1 23 397 419 397 419 0.98

10 11 1.4e-06 0.00035 22.3 0.6 1 23 425 447 425 447 0.99

11 11 0.051 13 7.9 0.2 1 17 453 469 453 470 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.2e-05	0.015	17.1	1.0	1	23	173	195	173	195	0.98
2	11	9.3e-06	0.0023	19.7	4.8	1	23	201	223	201	223	0.98
3	11	9.9e-08	2.5e-05	25.9	1.9	3	23	231	251	229	251	0.96
4	11	0.00015	0.038	15.9	0.2	3	23	259	279	257	279	0.98
5	11	0.00045	0.11	14.4	2.1	1	23	285	307	285	307	0.96
6	11	0.00016	0.04	15.8	1.3	1	23	313	335	313	335	0.98
7	11	2.4e-08	5.8e-06	27.9	0.7	1	23	341	363	341	363	0.97
8	11	2.4e-06	0.00059	21.6	0.9	1	23	369	391	369	391	0.98
9	11	1.2e-06	0.0003	22.5	1.5	1	23	397	419	397	419	0.98
10	11	1.4e-06	0.00035	22.3	0.6	1	23	425	447	425	447	0.99
11	11	0.051	13	7.9	0.2	1	17	453	469	453	470	0.95

Sequence Information

Coding Sequence: ATGGGAACAAACGAATATAAAGCTGACAAAATTTGTAGAACTTGTTTAAGTGAAAACGACGAAATGAGGTCGTTATTCTCTTCTGACGAGACTTTTGAAAAGTGTGTAAAATTGTATGAGATCTTAAAGAGAATAACATCGTTTAATGCAACTGAGGATGATGGATTACCTACACAAGTGTGTTTGCAATGTGCTACATTTTTATGCAAGGTCCATTCCTTTCAACTACTGTGTGAAGCTTCAGAAACCACCCTGAGACACCTATTAACAATGTCATCACTTAAAGAAAGAACGTGTGAAGATACAAAAATTAATCAAGAGGTTGAAGATAATATTAGTGATACAAAGATAGATTTCAGCAGTGATTATGATGATGTCAAGTCAGTGGATACCAGTTTTGAATTGATTTCTGAAGAAATCAATAAAGAAAATAATTTTAAGAAATTAAATGATAAAGAGCAAGAAAACGGTAGTACAGAAAGGGAATTGTACAAAGATGATACAGAGCAGCCAATATATCCTTGTGAAGAATGTACTGCCTGCTTTACCACAAAAATTGATTTAAAAGTACATAACCGAATTCACACAAAAGATGATCGTCATACCTGTAAAGTTTGTAAACAAAGTTTTGCCAGTGCTAGTACACTGTGTCGTCATATGAAGGTTCATAATGGCATTAAGCGccatttgtgttcagaatgtgggaaggggttttcaagatcagatgatcttacccgacacttaagaacccacaccggggaaaaaccttttggctgtaaaatatgcggcaaagcatatgcgcagtcatttagacttttagaacacatgcgcgctcatgcaaatgagaagagttttatttgctcttcctgtgggaaagcattttcacggTACACAAGTTTGGCTGCTCATTGCAAGACCCACAGTGGATTTAAAAGTCATGAATGTACTATTTGTGGCAAAAGACTTTGCGGCTCGGGCTCTTTGGCCATGCATATGAAAATCCACACCGGTGTTAAAGATCATATTTGTCCTTACTGTGGTAAAGGATTTACGACTCCAAGTAACTTAATTATACATAAAAGGACACATACAGgagaacgaccttacgtgtgtaagacatgcggtaagggatttcccgatccgtctcgtttaacagtgcatcataggtcacatagcggagagaagccgtacgtgtgtaccacgtgcggtcgaggatgcgtcagttcatctcagttaaaaaaacacattcgaattcatacgggagagaagccctatagatgtactatgtgctcgaaagcattcccacgaagtgaagatctccgaattcatgtgaaaactcatacgggagagcggaattatgtttgcgttgtgtgcaagaaaggattttacCAAGCGTCAACCCTAAAGGGCGTAATGCAAGACGATCCACGACAGTTAAAATTTAAATGGAAGTCTTTTAAAGTTGTTTACAGCATTCTAATGTTGTGCGGATTATTTTTTATCTTAATAACCAATTTTATAGTTGCCGTTACAACTAACGTTTGCTTAGTCAAAATAATTAATATTCTATTTTATGTCTTCTCATTTTTGGAAGCGGTTATATTTTTTCACCTTGCTATGACATGGCCCAAACTTATGAGACACTGGTCAAAAGTGGATGAAAAAATGAAAAGTTATGGCTATCCAAAAAAATTGGATTTAAAACTTAAACTTACTATTATACCTTTACTATTTATCGCTTCTATCGAATATTGTCTTGCCTTAGTACACAATGCCGCTTCTGACGACGGAAGAACCATAACTTTTCAAAATTGGGAGCTTTTTATGAAAAAACAATTTGCTCAAATTTTTAGCTTGATCGAGTACAGCTTGTGGAAATCTATTATTTTAATGATTGTTAATACTACAGCAACTTTTTTATGGAGTTACACCGACCTTTTCGTCATGTTGTGTAGTTTTGTTTTAGCAGCCAGGTTTAAACAGATAACAGAGAGATTAGATAAGAAAGATTTTCAGGTCAACAACGAATTATTTTGGAGAAGTATTAGAGAAGACTACGACAGATTAGCCCAATTATGTAGACATTTAGATGAGACAATTTCTAACGTTCTTTTAGTTTCTTATTCTACTAATTGTGATGAATTTCCTCAATGTAACAGAGAGAAAGATTGTGATCAGAAAGCGACAGCCAGGGAAATAACTTTTAGACATATCCCCTTGGTGTTTACTGTCGCCACAGAAGAAACAGACGGTTTCTTAAGGTTTATTAAGTCAGCAGAGGAATATGGCATTAGTCCTATTGTATTAGGAATGGGAGAAGAATGGAAAGGGGGTGAAGATATTCAAAATTCTGTAGGAGGAGGATGGAAAATTAATTTATTGAAAAAAAGTTTGTATTCGTACAAAGAACAACCTAATAGAATTATCATCTTTACAGATGGATATGACGTAATAATATTAGATGATCTCACTACAATAGTTAATAAATTTCTTGCCACTGGTGCTAAAATATTGTTCGGTGCGGAAAGTTTCTGCTGGCCTGATAAAAGTTTGGAAAAATTGTATCCGGAAGTAAAACAGGGCAAAAGGTTTTTAAATTCCGGTCTGTACATGGGCTACGCCCCCGAACTTTTGCGATTACTAGAACATCAAACAATTGGGGATAAGGATGACGATCAACTGTTTTTCACAAAAGCATTCTTGGATGCGGAAGTTCGAGAAAAACTACAGATACAACTCGATCACGATAGCAGTATTTTTCAGAATCTCAATGGAGCAATAAATGAACTCAAACTTGTTGAGGTTGAAACAAAAGAACGGAACGAGTTCCGGTTAAAGAATGTTCTGACAAACAAGTCTCCGTCATTTGTTCACGGAAATGGTTTCACAAAACTCAAATTAAATTCGTTAGGTAATTATATTGCAAAAGCCTGGAATCCCGTCGACGGCTGCAGACATTGCAAATGGCGTACAATAGATCTTACCAATGTACCAGATGATAAATTACCAACTGTTTTGCTTGCCGTATTGGTGGAAATCCCCACGCCCTTCCTAGAAGAGCAGTTGATGAAAATTTATAACCTCGACTATCCTAAAAACCGTATTCATCTTTTCCTTCATAATAAACTTAAATATCACGCAGATACTGTGAAAGAATTTGTCAAAAAATATGGGAAAGATTACTTATCACTAAAGGAAATCAAAGCCGAGGATGGTACAAGCGAATGGAATGCAAGGGATTTGTCACTGGAACTTAGTTTGAAGAAAAAGTGTGACTATTATTTTTCCGTTGATTCGTTGGCGGTGTTGGACAATCCTAAAACATTGCGTTTATTGCAAGAACAAAACCGCACTGTGGTGGCGCCATTGTTGGCACGGTATGGGAAGTCCTGGAGTAATTTCTGGGGAGCTCTTACGACCGATGGATTTTATGCGAGATCTCACGACTATTTGGACATCGTATACAATACGAAAAGGGGTCTTTGGAATGTGCCGTACATTTCAAACTGTTATTTGATAAATGCGACATTATTGAATCGATATGATAAGCAAAAGTTGAGCTATGTTCGTGACAACTTAGACGCAGATATGGCATTTTGCGCCAATTTGAGAGACTTGGGGGTATTTATGTACATTTCTAATCGTTTTGACTTCGGACATCTTATTAATCCTGACACCTACGACATCACCATTGCTGTACCTGATTTATACCAAATACAAGATAATCCTATGCTGTGGGAAGAACGGTACATTCATCCTAATTATTCTAACAGCTTGCAGCCAGGAAATACACCTATACAGCCATGTCCCGATGTATATTGGTTTCCAATTGGTACAGAACGTTTTTGTAACAACATGATCGAAATGGTGGAAAGTTTCGGTCAGTGGTCTGACGGTTCAAACCAAGATTCCCGCTTAGAAGGGGGTTACGAAGCAGTACCCACCCGAGACATTCATATGAAACAAGTCGGTTTCGATGAGCAATGGTTGTTCTTTTTGAAAAAATACGTACTCCCCTTAACCGAGCACGTTTTCACCGGCTATAATCACGATCCTCCCCGCTCTCTAATGAATTTTGTAGTGCGTTACAGACCGGACGAGCAACCCTCTTTGAGACCTCACCATGACAGTTCTACGTATACAATTAACATCGCACTTAATAGAGCAGGTATAGACTATGAAGGGGGCGGTTGTAGGTTCATACGATATAATTGTAGCGTAAAAGCCACAAAAATGGGCTGGATGTTAATGCATCCTGGAAAGTTAACCCACTATCATGAAGGACTTCTTGTAACAAACGGTACACGTTATATTATGATTTCTTTCGTTGATCCGTAG
Protein Sequence: MGTNEYKADKICRTCLSENDEMRSLFSSDETFEKCVKLYEILKRITSFNATEDDGLPTQVCLQCATFLCKVHSFQLLCEASETTLRHLLTMSSLKERTCEDTKINQEVEDNISDTKIDFSSDYDDVKSVDTSFELISEEINKENNFKKLNDKEQENGSTERELYKDDTEQPIYPCEECTACFTTKIDLKVHNRIHTKDDRHTCKVCKQSFASASTLCRHMKVHNGIKRHLCSECGKGFSRSDDLTRHLRTHTGEKPFGCKICGKAYAQSFRLLEHMRAHANEKSFICSSCGKAFSRYTSLAAHCKTHSGFKSHECTICGKRLCGSGSLAMHMKIHTGVKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCKTCGKGFPDPSRLTVHHRSHSGEKPYVCTTCGRGCVSSSQLKKHIRIHTGEKPYRCTMCSKAFPRSEDLRIHVKTHTGERNYVCVVCKKGFYQASTLKGVMQDDPRQLKFKWKSFKVVYSILMLCGLFFILITNFIVAVTTNVCLVKIINILFYVFSFLEAVIFFHLAMTWPKLMRHWSKVDEKMKSYGYPKKLDLKLKLTIIPLLFIASIEYCLALVHNAASDDGRTITFQNWELFMKKQFAQIFSLIEYSLWKSIILMIVNTTATFLWSYTDLFVMLCSFVLAARFKQITERLDKKDFQVNNELFWRSIREDYDRLAQLCRHLDETISNVLLVSYSTNCDEFPQCNREKDCDQKATAREITFRHIPLVFTVATEETDGFLRFIKSAEEYGISPIVLGMGEEWKGGEDIQNSVGGGWKINLLKKSLYSYKEQPNRIIIFTDGYDVIILDDLTTIVNKFLATGAKILFGAESFCWPDKSLEKLYPEVKQGKRFLNSGLYMGYAPELLRLLEHQTIGDKDDDQLFFTKAFLDAEVREKLQIQLDHDSSIFQNLNGAINELKLVEVETKERNEFRLKNVLTNKSPSFVHGNGFTKLKLNSLGNYIAKAWNPVDGCRHCKWRTIDLTNVPDDKLPTVLLAVLVEIPTPFLEEQLMKIYNLDYPKNRIHLFLHNKLKYHADTVKEFVKKYGKDYLSLKEIKAEDGTSEWNARDLSLELSLKKKCDYYFSVDSLAVLDNPKTLRLLQEQNRTVVAPLLARYGKSWSNFWGALTTDGFYARSHDYLDIVYNTKRGLWNVPYISNCYLINATLLNRYDKQKLSYVRDNLDADMAFCANLRDLGVFMYISNRFDFGHLINPDTYDITIAVPDLYQIQDNPMLWEERYIHPNYSNSLQPGNTPIQPCPDVYWFPIGTERFCNNMIEMVESFGQWSDGSNQDSRLEGGYEAVPTRDIHMKQVGFDEQWLFFLKKYVLPLTEHVFTGYNHDPPRSLMNFVVRYRPDEQPSLRPHHDSSTYTINIALNRAGIDYEGGGCRFIRYNCSVKATKMGWMLMHPGKLTHYHEGLLVTNGTRYIMISFVDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -