Acya014274.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- Zbtb46
- Assembly
- GCA_947389935.1
- Location
- OX376712.1:3427101-3431308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0087 2.1 10.4 2.5 2 23 145 167 144 167 0.96 2 20 0.0039 0.95 11.5 0.2 1 20 187 206 187 208 0.92 3 20 0.00031 0.077 14.9 4.8 1 23 284 306 284 306 0.95 4 20 0.00038 0.093 14.7 2.8 1 23 312 334 312 334 0.96 5 20 7.4e-05 0.018 16.9 0.4 2 23 341 363 340 363 0.95 6 20 0.002 0.49 12.4 1.5 1 23 522 545 522 545 0.96 7 20 8.8e-05 0.022 16.6 1.7 1 19 551 569 551 573 0.94 8 20 0.0029 0.72 11.9 0.5 1 23 579 602 579 602 0.95 9 20 0.00029 0.072 15.0 5.1 1 23 610 632 610 633 0.95 10 20 0.00013 0.031 16.2 0.9 1 23 640 663 640 663 0.97 11 20 0.00057 0.14 14.1 0.4 2 23 673 695 672 695 0.97 12 20 0.0039 0.97 11.5 0.3 1 21 709 729 709 730 0.92 13 20 0.00036 0.09 14.7 4.9 1 23 806 828 806 828 0.97 14 20 0.00084 0.21 13.6 2.0 1 23 834 856 834 856 0.95 15 20 0.00031 0.076 14.9 2.5 2 23 863 885 862 885 0.95 16 20 8.5e-06 0.0021 19.8 3.1 1 23 893 915 893 915 0.99 17 20 0.00086 0.21 13.5 3.5 1 23 921 943 921 943 0.97 18 20 0.00043 0.11 14.5 0.3 1 23 949 972 949 972 0.97 19 20 9.3e-06 0.0023 19.7 3.0 1 23 986 1008 986 1008 0.98 20 20 7e-06 0.0017 20.1 2.5 1 23 1014 1037 1014 1037 0.97
Sequence Information
- Coding Sequence
- ATGCAAAAACCAGCAGAATTTTGTTGTACATGTTTAAAATCGGGTGTTCAGTTAAATAATACTTTGGAATTAGACTCCAAAAGCACAGATTATACTACGAAATTAAGATTTTGCGTCCCGGAAGTGGAATGGTCACCCGGTTACATTTGCGAGCAATGTTTGGTGATCTTAAATCAGTGTTATTCATTCAAGGAACAATGTCTTAAAGCGAACGAAGTTTTGTCTGAAGACAAGTTTCACTTGTTGCCAAACGTAAGTTTAAACAATGAAAAATCAAGCTCTATCTCCGAAACAAAAGACGATATTGTAAAAAGTGAACAAGTTAGTGACGATGATGAATCTGACTACAAGCCCGAAACAGATGACGACAGTACGGATGAAAAAAGTTCTAGTAGAGAAGAGACACCGCCCCCTCCTCAAAAAGGCAAGTTAAACTGCAGTTTGTGTGAAAACAAGTTCTCAAACAGACACTTGCTACTCGTACACAAAAAAACAGAACATACAGATGGGCAAGTCCCTAAAACAGAGACTAATAATTTAGGACGAAAGCCTAAAAAATATCCATGTGAAAAATGCGGCAAAAAATACACCACGACAAAAATACTCAACTCTCATATCACCATCTGCGACGGCATAAAGAGGCACGCCAACAAGAAAGACGCAGACGAAAACACTGAAGACGAATTTTTCAAAACTACCCAACTCATTCCAAAAAACAAAGAATCGACGAAACAGAAGGTAGTCCATTTGACTTGCGAATTCTGCGACAAAGTGGTCGGCGCATTCAAGAAATACGTGGCCCATTGCGTCGAGGAGCACGACAACTCAAACCCGGAAACCCTAAAGCCTTATTTATGTAAAGTCTGCAAGCAACGTTTCAGCACGTCGACTCATCTTTCAAGACATCGTCTCCAGCACTCGGACAAGAAAGCGCACATGTGCACGTTTTGCGGCAAAGGCTTTAAAACGCGCAAAGACATACTGAGACACGAAAAGATTCACACGAACAAACGCGAGGTCCAATGCGAACTTTGTCCAAAAAGATTCAACACTAAAAACCTCTTAAACTCGCACAAACTCGTCGTACACACGGACCCGATGCTTTGGAACTAcgtttTTGAAAAAATGCAAACATTACAAACAGACGCAGAATTTTGCTGTACGTGTTTAAAATCGGGCATTCAGTTAAACAATACGTTAGAAATAGACTCTAAAGACGTAGACTACACCACAAAATTACGGTTTTGTGTACCAGAAGTGGAGTGGTCAACAGGTCACATTTGTGGACAATGTTCAGGACATTTAGACCAATGCTACGCTTTTAAGGAGCAATGCTTAAAGTCAAACGAAATCCTGACACAGGGTAAATTTCATTTCTTATCGAATGAAAAGCCTGACGTTAAAGAAGATGCAGCAAACACAAGCGACGGTGAGTCGTATTCAGGTAATTCGGTTAAAGATGAACGCTTCAGTGATGACGATATTTCGGACTTTGATGAGAAAGAGTATACCAATAGTAAATGTGATAAAGTAGAAGTTGTTGCGCTGTCTGAAAATGGCCAGTACAGTTGTAGTTTATGTGATAATTCGTACACCGATCGAGATTTGTTATTCCTACACAAAAAGAACACACACAAAGCAGAAAACCCGTACAATTGTTTGCACTGTGATAAAGTTTTTAAATACAATCAAGAGCTAAAACGTCACGAGCCCATACATTCAGACCACACAGGTTTTGTGTGCGACATCTGCAAACAATCGTACAATACGTCGTCAATTCTTGCCAAACACAAGCTAATAAAGCACACAAAACCGGACACATGGAAGTACATATGTCGCCATTGCGACAAAAAATACCCTTTCAAATCAAATTTAGACCAGCACATCAGTCGACATCACACCAACGCAGGAGACACGTATATCTGCTATCATTGCAACGAGAGCTACGACACCAGGATTCTACTCATTGCCCATATAAGGTCCAAACATTCCACACAAAACATGCTACGAATGAAAGAATGCACCGTTTGTCAAAAGACGTACATAAACCAAGTCATACTTGAGAATCATATGCGAAAAGAGCACAACGTGGGCGCCACAAAATTAGTACGAAGACAGAAACAATATCCGTGCGAAAAATGCGGGAAAAAGTACACGACCACGAAAATACTAAATACTCACGCGAGGGTCTGCGATGGCATAAAAAGGCACTTTAATAAATTACCGAAAAGAAATAAGGAAAAAGCTGAAGCAGACAGGCGCGATAGGTACGGGAAGAGCAACGACTTGGGGGTCGCGAAACAAAAAATTGTTTACCTAACGTGCGAATTCTGCGAAAAAATTGTAGGACCGTACAAAAGATACGTAGCCCATTGCGTAGAAGAACACAATTCAGACCCGGAAACGCTGAAACCGTACTCGTGCAAAGAATGCAAAGAACGCTTCTGTACTTCCACCCTCTTGTCCAGACACCGGCTGCAACACACGGGCAAAAAAGCGCACATTTGTAGCTTTTGCGGCAAAGGTTTCAAGACGCGCAAAGACATGCTAATCCACGAGAAACTTCATTCGAATAAGCGCGAAGTACAATGCGAACTATGTTCGAAAAGATTTCACACAAAGTCCTATCTGCGATCGCACAAACTCGTGGTCCATACGGACCCGATGCGTTGGAAATACGTGTGCCAATATtgcggcaaaaggttccccatgaagtcgaactacgaccaccacgtccgtcgacacacgggggaaaaaccgtttgcgtgtcacttgtgcgaaaaaaggttcTCGGACAAATTCGTTCTGCAGCAGCACTTCAATTCGCATTCGAATATTCGCGCGTTCAAGTGCGATCAGTGCGGTAAAGAATACAAGAGTGCGAGGGTGCTTGGTATACATTTGAAGAAAGCTCACGGAATCGGGAACTATAAGGTGCCTGTAAGACCGAAAAAGTTCGTTTGCGATTACTGTTCTAAATCGTTCGCGGCCAGGGACAAACTGAGGAGACATATGTGCTCGCATACTGGCGAGAGACCATATGCGTGTCATATATGCGAAAAGCGTTTTACTGATAAGTCTTACGTTAAACAACATCTTAAATCCGTGCATAATTTACTTGAAGTAAAACAAGAGTTTGATATTAGAAATTGA
- Protein Sequence
- MQKPAEFCCTCLKSGVQLNNTLELDSKSTDYTTKLRFCVPEVEWSPGYICEQCLVILNQCYSFKEQCLKANEVLSEDKFHLLPNVSLNNEKSSSISETKDDIVKSEQVSDDDESDYKPETDDDSTDEKSSSREETPPPPQKGKLNCSLCENKFSNRHLLLVHKKTEHTDGQVPKTETNNLGRKPKKYPCEKCGKKYTTTKILNSHITICDGIKRHANKKDADENTEDEFFKTTQLIPKNKESTKQKVVHLTCEFCDKVVGAFKKYVAHCVEEHDNSNPETLKPYLCKVCKQRFSTSTHLSRHRLQHSDKKAHMCTFCGKGFKTRKDILRHEKIHTNKREVQCELCPKRFNTKNLLNSHKLVVHTDPMLWNYVFEKMQTLQTDAEFCCTCLKSGIQLNNTLEIDSKDVDYTTKLRFCVPEVEWSTGHICGQCSGHLDQCYAFKEQCLKSNEILTQGKFHFLSNEKPDVKEDAANTSDGESYSGNSVKDERFSDDDISDFDEKEYTNSKCDKVEVVALSENGQYSCSLCDNSYTDRDLLFLHKKNTHKAENPYNCLHCDKVFKYNQELKRHEPIHSDHTGFVCDICKQSYNTSSILAKHKLIKHTKPDTWKYICRHCDKKYPFKSNLDQHISRHHTNAGDTYICYHCNESYDTRILLIAHIRSKHSTQNMLRMKECTVCQKTYINQVILENHMRKEHNVGATKLVRRQKQYPCEKCGKKYTTTKILNTHARVCDGIKRHFNKLPKRNKEKAEADRRDRYGKSNDLGVAKQKIVYLTCEFCEKIVGPYKRYVAHCVEEHNSDPETLKPYSCKECKERFCTSTLLSRHRLQHTGKKAHICSFCGKGFKTRKDMLIHEKLHSNKREVQCELCSKRFHTKSYLRSHKLVVHTDPMRWKYVCQYCGKRFPMKSNYDHHVRRHTGEKPFACHLCEKRFSDKFVLQQHFNSHSNIRAFKCDQCGKEYKSARVLGIHLKKAHGIGNYKVPVRPKKFVCDYCSKSFAARDKLRRHMCSHTGERPYACHICEKRFTDKSYVKQHLKSVHNLLEVKQEFDIRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -