Acya020336.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus cyanescens
Gene Symbol
-
Assembly
GCA_947389935.1
Location
OX376706.1:31617910-31621153[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00021 0.052 15.4 1.8 1 23 319 341 319 341 0.98
2 16 1.8e-05 0.0043 18.8 0.2 1 23 347 370 347 370 0.97
3 16 1.4e-06 0.00035 22.3 1.1 1 23 376 398 376 398 0.99
4 16 7.6e-05 0.019 16.8 4.0 1 21 404 424 404 426 0.94
5 16 0.026 6.4 8.9 0.5 1 23 432 454 432 454 0.98
6 16 9.3e-08 2.3e-05 26.0 1.0 1 23 460 482 460 482 0.98
7 16 0.00029 0.071 15.0 0.9 1 20 488 507 488 509 0.93
8 16 8e-05 0.02 16.8 1.3 3 23 562 583 560 583 0.94
9 16 1.8e-05 0.0045 18.8 3.0 1 23 610 633 610 633 0.96
10 16 1e-07 2.5e-05 25.9 0.7 1 23 666 688 666 688 0.98
11 16 3.3e-05 0.0083 18.0 2.0 1 23 694 717 694 717 0.96
12 16 0.00085 0.21 13.5 0.4 1 23 723 745 723 745 0.96
13 16 1.1e-06 0.00027 22.7 1.1 1 23 751 773 751 773 0.96
14 16 5.4e-05 0.013 17.3 0.9 1 23 779 801 779 801 0.95
15 16 0.015 3.6 9.6 7.9 1 23 807 829 807 829 0.96
16 16 4e-05 0.0099 17.7 3.6 2 23 836 857 835 857 0.96

Sequence Information

Coding Sequence
ATGGAACAAGACATTTTTCAAAATACTGAAGAAAGCACAAATAATAAAAGCCAAGTAAATCTCAACTTATGTAGAATCTGTGCATCTACAAGTGAAAAAATGTGTGACATATTTAGCTCGGAAGGAATTGCACAAAATTTGGCCTACAAAATTAATGTGTATCTCCCATTTAAAGTTACTGAATATGATGTGTTGCCTCTAAGCTGTTGTTTTGATTGTATTTCAGTCATTTCTACCTGGCACAAATTTATACTTAAAAGTTTAGAAACTGAGAATATGCTTCAAGAAATTTTCAGAAAAAACAGCAACGAACAAAATTGTGATGCAAAAACATCTCCAATATCTGATGCTAGTGGGGCAGATACTGATCTAAGTTCATCTGATCTACTAATATTCTGCCAAGAATCTAAAGTTGATTTTAAAAATCAATACAACGATAAAAAAGTCGGAAATAAATTAAATGAACAACCACTTTGTGTTCCTCAAGATAATTTAGAAGGGGAATTGTTCAGTTTGAAATGTGAACTGGGCAAAGTTCCAAAATGCTTTAATGATAACAACATCATCTCTAACATACCAAGCATTCTTTTGATAGAGTTAAAGGAAGAATTAAACATAGATCGCCGGCGAGAAAGTAGCTTAGTATTTAATTCCAATAGCACGGCAATTGAAAATGTAGTAACAAATAAAGAAGAAACAGTAACGCTTTCAAGTACTAAACGAGCCGAAGAAATGAGAGAAAACCCAGTAGAAAAGGAGGCGGACATAAAAAAGACCAATAAAACAAAAACGACTGGTAAAAATAATCACAAAAAGAGGAAAAAAGATGATCAACCTGGAAACAAATCACCGGAAAATAAGTTGATCATCTCGAAATTTAAAAGACAACATCAAACCAAACTCGATCACGAAGCCCTAAAATTAGCCAAGATGACCGTTGAAGGACGCGTCTACTACAATtgcaatatatgcgggaaaaacctccattctccttacacttacacgtggcacaggcgcatccacagcggggaaaaaccatacgtttgcgatttatgcggaagacaatttcgtgtatctcagggactaatcagacaccttcgggagacacacgaaggcctgaagaactaccgatgtgacacctgcggacgcatgttcgcaactaaacgaaacgtcgaagaacatcgcagaacacacacagaagaaagaccgtacgtttgcgatcactgtggtaaagcgttcaaacaaaaggcgaccttgtttgtgcacaacaggtgccactctgacacgtatccatacaaatgtatctactgtaatttaatgttccgatcgcggcctccaatgttaatacatattaaacgtcacaccggagagaagccctatccgtgcgagatttgtggaagacgatttagaactaggtacgatttgaagaaacatacgatggtacattcagatgaaaaaccctattcttgtacggaatgcggcTCCAGTTTCCGACAGAAAAGATATCTTTCAAATCATAATAAAATCAATCCTAACTGCAAAACCAGTAATTATCCATCACAAGAAACTGTTTCAAATAAGAAAAGAAGCGAAAAACACAAAGAAAAGGATATTCCGAAAAATTCTGTAGAAATTAACAACATAACTAGAAGAAAAAAAGTTGAGATAGATTACAAATTATTTTGCGTGACGTGTAATAAAGGATTTACCAGAAACTTCGACTTAAAACGACACACAATAAAAGCCCACTTTTTAGAAGAAGACAAAGCTGCTTCAAGCGTTCCCCTAAAAAAACGCAGAAGAAAAAAGACTGAAATAGATGCGACTTTTGAGTGTGAACTTTGCCAAAAAAAGTTCACCAGAAATTTCGATTTACTGCGTCACAAACGTCTTAAACATCCAGAAAAATTGTCTCGTGCACAGCAAATAAATAAAACAAAAGAAAACAATCAATTAATCCTTAAATCAAAAGTGGTTGTTAACAACAAAACTTTTTACGAGTGTAAGGTGTGCGGATATAAATTCAGTAAATCTAGTAATTTAGTGCGACATATAAGTGTACACACTCAAGTCTTAAACTATAGTTGTCGCGTTTGTGGAAAGCGTTTTCGATTGGAGTCCGCATTGAGTCGCCACATAAATCACTACCATCTGGGCATAAAAAAATTCGCCTGTGACATATGCGACAGTAAATTCGCCTACAAGTATTCTCTCGAGGATCATAAAACTATACATTTAGACTGCAGGCCGTTTGTGTGCGACCGGTGCGGGAAAACGTTTAAAAATAAGGGTACTCTCAAGAGGCACAATATTATCCATTCGGAAACGTATCCGTTTCAATGTAATTCTTGCGGGAAAAAATATAAGAGGCTGGGAGACCTAAAGATACACGAAACTTTACATAGTGCCTACAAAAGGCATTGCTGCCACCTATGTGGAATAACATTCAGGCTAAAACATGTCCTCCAAAGACACCTAAGTATTCACGACAAGCTCAACGAATGTTACTGTTCGGAATGCGGATTGAAGTTTAGGCAAGAGAAGTACTTGAAAGCGCACCAAAAATCTCATAAGAATAAATAA
Protein Sequence
MEQDIFQNTEESTNNKSQVNLNLCRICASTSEKMCDIFSSEGIAQNLAYKINVYLPFKVTEYDVLPLSCCFDCISVISTWHKFILKSLETENMLQEIFRKNSNEQNCDAKTSPISDASGADTDLSSSDLLIFCQESKVDFKNQYNDKKVGNKLNEQPLCVPQDNLEGELFSLKCELGKVPKCFNDNNIISNIPSILLIELKEELNIDRRRESSLVFNSNSTAIENVVTNKEETVTLSSTKRAEEMRENPVEKEADIKKTNKTKTTGKNNHKKRKKDDQPGNKSPENKLIISKFKRQHQTKLDHEALKLAKMTVEGRVYYNCNICGKNLHSPYTYTWHRRIHSGEKPYVCDLCGRQFRVSQGLIRHLRETHEGLKNYRCDTCGRMFATKRNVEEHRRTHTEERPYVCDHCGKAFKQKATLFVHNRCHSDTYPYKCIYCNLMFRSRPPMLIHIKRHTGEKPYPCEICGRRFRTRYDLKKHTMVHSDEKPYSCTECGSSFRQKRYLSNHNKINPNCKTSNYPSQETVSNKKRSEKHKEKDIPKNSVEINNITRRKKVEIDYKLFCVTCNKGFTRNFDLKRHTIKAHFLEEDKAASSVPLKKRRRKKTEIDATFECELCQKKFTRNFDLLRHKRLKHPEKLSRAQQINKTKENNQLILKSKVVVNNKTFYECKVCGYKFSKSSNLVRHISVHTQVLNYSCRVCGKRFRLESALSRHINHYHLGIKKFACDICDSKFAYKYSLEDHKTIHLDCRPFVCDRCGKTFKNKGTLKRHNIIHSETYPFQCNSCGKKYKRLGDLKIHETLHSAYKRHCCHLCGITFRLKHVLQRHLSIHDKLNECYCSECGLKFRQEKYLKAHQKSHKNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-