Basic Information

Insect: Agrilus cyanescens
Gene Symbol: -
Assembly: GCA_947389935.1
Location: OX376710.1:23409090-23411565[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0014 0.34 12.9 0.5 1 23 113 135 113 135 0.98

2 15 1e-06 0.00025 22.7 0.9 1 23 141 163 141 163 0.99

3 15 1.3e-06 0.00031 22.4 1.3 1 23 169 191 169 191 0.98

4 15 0.00065 0.16 13.9 6.7 1 23 197 219 197 219 0.97

5 15 2.8e-05 0.0069 18.2 1.3 1 23 225 247 225 247 0.97

6 15 2.7e-06 0.00068 21.4 6.6 1 23 253 275 253 275 0.98

7 15 0.00042 0.1 14.5 1.7 1 23 281 303 281 303 0.98

8 15 1e-06 0.00025 22.7 2.9 1 23 309 331 309 331 0.98

9 15 1.4e-06 0.00034 22.3 5.4 1 23 337 359 337 359 0.99

10 15 2.5e-07 6.3e-05 24.6 3.1 1 23 365 387 365 387 0.99

11 15 5.1e-06 0.0013 20.5 2.6 1 23 394 416 394 416 0.97

12 15 5e-07 0.00012 23.7 0.9 1 23 422 444 422 444 0.98

13 15 1.2e-08 2.8e-06 28.9 0.5 1 23 450 472 450 472 0.98

14 15 7.6e-05 0.019 16.8 3.7 1 23 478 500 478 500 0.98

15 15 7.3e-07 0.00018 23.2 1.6 1 23 506 528 506 528 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0014	0.34	12.9	0.5	1	23	113	135	113	135	0.98
2	15	1e-06	0.00025	22.7	0.9	1	23	141	163	141	163	0.99
3	15	1.3e-06	0.00031	22.4	1.3	1	23	169	191	169	191	0.98
4	15	0.00065	0.16	13.9	6.7	1	23	197	219	197	219	0.97
5	15	2.8e-05	0.0069	18.2	1.3	1	23	225	247	225	247	0.97
6	15	2.7e-06	0.00068	21.4	6.6	1	23	253	275	253	275	0.98
7	15	0.00042	0.1	14.5	1.7	1	23	281	303	281	303	0.98
8	15	1e-06	0.00025	22.7	2.9	1	23	309	331	309	331	0.98
9	15	1.4e-06	0.00034	22.3	5.4	1	23	337	359	337	359	0.99
10	15	2.5e-07	6.3e-05	24.6	3.1	1	23	365	387	365	387	0.99
11	15	5.1e-06	0.0013	20.5	2.6	1	23	394	416	394	416	0.97
12	15	5e-07	0.00012	23.7	0.9	1	23	422	444	422	444	0.98
13	15	1.2e-08	2.8e-06	28.9	0.5	1	23	450	472	450	472	0.98
14	15	7.6e-05	0.019	16.8	3.7	1	23	478	500	478	500	0.98
15	15	7.3e-07	0.00018	23.2	1.6	1	23	506	528	506	528	0.99

Sequence Information

Coding Sequence: ATGGGTACCGCCATCTATATTGACTGTACTGATTTATCCAATGGATCTAAAAGTGTCTCCACTTATCTCAATGGTCAGAGAAGAAGAGGAATAAGAACAATAGAAACGCCTAGTTTAACAGTGAAAAGTGAATTATTGCAAGATAACTACAATGTTGATAGTGCGTGGAATTTTGCAGATAATAGAGAAAATGTGCTGTTAAATTTAGATTCTGTAAAAGAAGAAGCTGCTATTAAAACAGAAGTAGAAGATAATATTTTGGAAGACGAAATCGAACTTAAAATAGGCAGTGCTGCTACAGATTTAACTAATTTTACCATTGTCAAGTCAAGGCAATTTAAATGTAAATTCTGTCCACAAGTTTATACACTAAGATTAGATCTCAGTAATCACCTAGAAGTCCATAGCGATAGGAGGATATACAAGTGCGAATATTGCGAGAGGAACTTTGCTTCCAAaggggactacactcgtcatgttagaattcatacaggcgaaaagccatacaaatgtgaacagtgcgataaaacttttaatcagaaatctaaattagatactcatgtattagttcacagtaatcacaaacctcacgtatgttcgttctgtaacaagggcttttttcaaaaacattatctcagattacatttacgtaatcatacaggagaaaggccattcatgtgtgaaatatgtcataagcagttcacacaaaaagctattctgaatgcgcacatgcagctacattctggaataaaagctcataagtgtgaggaatgtggaaaaagctttcaccagaaatccaaactGTTCACCCATTTACGTAGTCATAGCGGTGACCGGCCATTTATGTGTAAATGGTGTCTAAGGACATTCACAGAAAGGACAACTTTGGATAAACACATTACTACTCATTCAAacgaaagacctttccaatgtgccgagtgccaaaaatgcttttcaaataaaaatcagcttcgcgttcatgttaaaatccacactgaccttaaacctttcaaatgcacaacttgcgacaaatcttttgctcacaagaaatacttgaatacccatctccaaacgcatgcagaagaaaagaacttcaaatgcgagttctgtggtaaatgctttgctaagaattcttacttgttgaatcatatccgaatacatgacggaacgaaggaaaagttcgagtgtgatatttgtcataagaccgttaccagcaaatcgtatcttagaagacattcagcaacacacaggggcgagaaaccgtttaaatgcgagacttgtggacagaggtttactcagaaAGCTGGTTTGATGCGCCATCAAATGTtgcatactggtgagcgtccgtttgagtgtccgatttgcgacaagcgtttcgttaaaaagtcgaacttgaccagtcacgttcgcgtccacaccggggaaaaaccgtacgagtgccaaatatgtcagaaacggttccccgaaaaacaccacctcgatctacatacgcgcgttcatacgggcgaaaaaccgtatgaatgtaaaatatgtttgcgtagattttcgcaaagatctcccctaaaaaagcacatgctcacgcatgcgcttaagactgatgcaaatgtgGATGTTAAGCAAGAACAAGAAAGTTCCGATTTAATTATTTTGTAA
Protein Sequence: MGTAIYIDCTDLSNGSKSVSTYLNGQRRRGIRTIETPSLTVKSELLQDNYNVDSAWNFADNRENVLLNLDSVKEEAAIKTEVEDNILEDEIELKIGSAATDLTNFTIVKSRQFKCKFCPQVYTLRLDLSNHLEVHSDRRIYKCEYCERNFASKGDYTRHVRIHTGEKPYKCEQCDKTFNQKSKLDTHVLVHSNHKPHVCSFCNKGFFQKHYLRLHLRNHTGERPFMCEICHKQFTQKAILNAHMQLHSGIKAHKCEECGKSFHQKSKLFTHLRSHSGDRPFMCKWCLRTFTERTTLDKHITTHSNERPFQCAECQKCFSNKNQLRVHVKIHTDLKPFKCTTCDKSFAHKKYLNTHLQTHAEEKNFKCEFCGKCFAKNSYLLNHIRIHDGTKEKFECDICHKTVTSKSYLRRHSATHRGEKPFKCETCGQRFTQKAGLMRHQMLHTGERPFECPICDKRFVKKSNLTSHVRVHTGEKPYECQICQKRFPEKHHLDLHTRVHTGEKPYECKICLRRFSQRSPLKKHMLTHALKTDANVDVKQEQESSDLIIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032213;
90% Identity: -
80% Identity: -