Acya016423.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus cyanescens
Gene Symbol
-
Assembly
GCA_947389935.1
Location
OX376712.1:18502242-18512643[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-09 9e-07 29.9 0.0 2 36 11 45 10 52 0.90

Sequence Information

Coding Sequence
ATGTCTCAAAGGCCTATTCATCGATATAAGGAAAAAAACCTTACTGAAGCAATGGAAGCGGTTCGAAAGGGGATGAAAATAAGAGAAGCCAGTAGAGTTTTTGAGGTGCCCAGATCTACAATTCAAGATAGATTACTGTACCGTCTTGTAATGACGGACTACCCTTTAAAAAGTATTTTAACTATGGATTATCTAAAACAATTAAATGCGGCCGGTTCGGTAGAGTTCAAAACAACGGTATCGTTAAAAACGTTAGAAATTGGGAAACTATATCGCATTGAACGAGTTTTCGCCGTACAAACGCGATATGGTCGACAGGTGAAGGTCGATCTAGGAGACTTTGAATGTTTTTTGCCACAAAGATGGGCCAAAATTATTCCTGATGAAAAGTTTTCAGAATTCGTGGACACGGGCCTTGTTTTAAAAGGTGTCAAAAAACTACCAAATGGAGCAGAAACGTCTGAAATTAATTTCGAAAAACTAAAGAATCAACATTTGAATGAACAATTACATTCGCTTCCGAGTACTAGTAACATCATGGAGCAGCCTCCAGCTAAAAGAGTTAAGCTTACAACATGTGATATTTGCAAGTGTACACTTGAATCCGTAAATTATTCTGCACATCTTAAATCTATTAACCATAAGAATAAATGTTTGGAACGTGATGTCACTCTTGGTTCTAATGTTCATGAAATATTATCAGCGTTCAATAGAAAAGTGGTTTCCTATCGTTTGATACCTAATAATAATACAAAAATTGCCAATCTACCTATAAACGACTATAGCAATTTATTAATAGAAAACTTCATTCATAATATACGGAATGAAATCGTGACCATCATAAATAAAAAACTTAAGGATTTTAACGTGTTGAAAGTAAATTTCGAACTTTATGGAAGTTTTCTGAAGCCTGCAGCAGTCTCAGATGATAATGATGGAAAATACAACTTGGAAGTAAAATCTTTTCTGGTTCCCTACCAAGTTGTAGATAAATCTATCAATGTAAACGAAATAATTGAAAATTTAATTGCAAATTTAAAGAAAAAGCTTGAGGAGTTCCAGGAACGTgatagtggatatgcacttcaggaacttttatttttggaagtcaatttggtgaaatacaatccactgaaagcttccacctatgtaaaccttccattggacattgagcgcaaaaaggctgttattaacgttaaaaaccaagataataagtgtttcatctgggcaattctttccgcactatatcccgtcagatgtcgtaaaaatcatgtatcaagttataggaaatatctttcaaagctaaatttaacaggtatgacctttccaatgaccttttgtaacattaaattgtttgaaaaattgaatcctaatgtaagtgtaaatgtttttggtctcgaaaaacaaaaagaaaagtcaataattgtaggaccatattatttctctcaatgtagaaaattaaaccatgttaacttactatacatcgaagaagaaaataaacaacattactgttatattaaaaatttaagtcgtcttatttcgaagcagctaagtcggagaaaaactgttaaatatatttgtgatggttgcttgcaatattttggtagtgaaaatcttttagctaatcatatgcaacaggactgtgcgaaatgtgtaaccgttttaccttcagctggaaataattttttaaaatttaaacaaatagaaaagcaaattaaagttccttttgttatatatgccgattttgaatctttgctagttccaattcgacaatcttcagaatcgtcgatagatgatactaaaacagtatctactcacattcataagccatttagttttgcctattacgttaagtgttgttatgacgattcactttcgaaattttattcgtttcggggagaaaattgtgcaaaagttttctgtaatatgattaaaaatgaagcttctcatatataccatacatacttaaaaaatattattcctatgaaagaattaactgaagaggatttagaaaatttcgcatcggcaacaaactgttatttatgtaacggagatttaggttcagataaaattaaagatcactgtcacctcaccggcaaatatagaggctgttgtcataattcctgtaatttgaaagtaaaaaccgttaactttatcccggttttctttcacaattttagcaattatgattgtcatctttttatacgtgaatttgccgccgaagatgacgaaccaatgaatgtcattccggtgaataaagaaaagtatatttcatttacaaagaaaattttagttgatagaaaaaataatgaaaacagttacatagatttacgttttgtagattcttatcgatttatgaatcgaaaattggagacactcgctgcaaatttatcagatgatcaaattatagaattaagaaacttttttccaaatgatgaagaatttagattaatgcgtcaaaagggtgttttcccatacaattatttagatacgttggaaaaattaaataacgaatgtttaccttcaaaaatggatttttacgattcaatgcaagatacttcaatttctgatgcagactatcaaagagcaaacgatatttggcataaattttcatgtaaaaatttaggtgaatacagtgacctctatttaaaagtagacgtaattttattatgcgacgttttcgaaaatttccgaaatttatgtttgaatacatacaaattagatccggtccatttttatagtttacccggcttgtcatggcaggcaatgctaaaatttaccaatgtacagttggagttgttaactgactgttcaatggtactcttttttcaacgaaatatccgaggtggttatgctggagtggttcaacgtttcgcacaggccaacaataaatatattccctctaattacaacaattcacaagcaacatcttacatatcatattgggatgcaaataatttatatggatatgcgctttcggaaaaactgcctatatcgaactttcgatggctctcacaaaacgaaattgattcatttaatataaataactatacagattctgatgatcaaggatatgttttggaagtcgatattcattatccaaaacatttgcatgatttgcacaatgattttccaatgtgtattgaaaaaatgaaacctccaaattcaaaatgtaaaaaattattgcaaacctttttcgataagcaaaattacgttattcatataaagactcttaagcaatgtattgaaaatggtttagagttgtcaaagattcatagaattctcacgttcaagcaatctgcttggatgaaaccgtttatcgattttaatactcgtctaagacaaagtgccgcaaacgcatttgaaaaagatatgtacaaattaataaataatgcaaactatggaaaatgtatcgaaaatatagaaaaaagggttaacgttaatttagtcaattcgtggaaagatttgggtcataaaaaaggagttgagaaattagtttcacaacccaattttcatagtatatccatttttgatgaaaattttgcagcagtacaattgttaaagtctcaaatctattatgacaaaccaatttacgccgggtttgcagtattggaaattgccaaatttgtaatatttgatacctcaaattattctattgataatatttttgaaatgcctttggtaaacaaagccatcccagcacttatgaaagatgaagtttgtggtaagattatttgggaatttgtcggtcttaaagctaaaatgtatgaagtgaatatagaaggaagtttgataatgaaaaaggctaaaggtgttaaaaagaatgtaataaagtcattaacggaaaaagattttaaatatgtattaaatgaaaacgagatagtactgaagcgacaaaatgtatttaggtctttaaagcatataatttattctcaatgcattaataaaattgctttgtctgcggatgatgataaacgtttccatataccagaaacgtataagactttagcatggggacactacaaAATTACTACTGATAATACTAACAATAATTTAAGAAGAGAAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAATGGATAATAGTAGTGAAAGCAAAATGGCAGTTGTACAGTTAAAACCGGGAAATAAAATCAAAGTTCTTTCAGCATTTGAATTAATCCAACTGGCAAATGTTGTGCAAGCGACTGCTGAGGAGAATTGGCATAGCAGTATTGCAAATTTAGAAGAAAAATGGAGAACATCAAACACTGGCGTGTTTGATAGTGATTTGTTCAATATTGTAGCTTGTCCGCTATCTGAAATTTTAAATTATCCGAAAACCATCGATCCTAATAATGGTAATAATGAAGAAATTTACCATACAGGGAAAACGTTAGCGTTAGAAGTGCAGAAAAGAAGAGATATTTTTAAAGAACCGAAGAAAAGAAGAATAGTAATGGAAAAAGGGAAAAAAAGACAAAGGAAAAGAAACGAGAAAGAATCTTATGCATTGATATCACCACCACTACCATCCTCGCCTCCGCCACCGCCGCCGCCGCCGCCCACTACAGCGAAAAACGAACAATGCTGCTACCTATTTGATAATATTTATAAAGAATTGGGAATTAAAGATTTGTAG
Protein Sequence
MSQRPIHRYKEKNLTEAMEAVRKGMKIREASRVFEVPRSTIQDRLLYRLVMTDYPLKSILTMDYLKQLNAAGSVEFKTTVSLKTLEIGKLYRIERVFAVQTRYGRQVKVDLGDFECFLPQRWAKIIPDEKFSEFVDTGLVLKGVKKLPNGAETSEINFEKLKNQHLNEQLHSLPSTSNIMEQPPAKRVKLTTCDICKCTLESVNYSAHLKSINHKNKCLERDVTLGSNVHEILSAFNRKVVSYRLIPNNNTKIANLPINDYSNLLIENFIHNIRNEIVTIINKKLKDFNVLKVNFELYGSFLKPAAVSDDNDGKYNLEVKSFLVPYQVVDKSINVNEIIENLIANLKKKLEEFQERDSGYALQELLFLEVNLVKYNPLKASTYVNLPLDIERKKAVINVKNQDNKCFIWAILSALYPVRCRKNHVSSYRKYLSKLNLTGMTFPMTFCNIKLFEKLNPNVSVNVFGLEKQKEKSIIVGPYYFSQCRKLNHVNLLYIEEENKQHYCYIKNLSRLISKQLSRRKTVKYICDGCLQYFGSENLLANHMQQDCAKCVTVLPSAGNNFLKFKQIEKQIKVPFVIYADFESLLVPIRQSSESSIDDTKTVSTHIHKPFSFAYYVKCCYDDSLSKFYSFRGENCAKVFCNMIKNEASHIYHTYLKNIIPMKELTEEDLENFASATNCYLCNGDLGSDKIKDHCHLTGKYRGCCHNSCNLKVKTVNFIPVFFHNFSNYDCHLFIREFAAEDDEPMNVIPVNKEKYISFTKKILVDRKNNENSYIDLRFVDSYRFMNRKLETLAANLSDDQIIELRNFFPNDEEFRLMRQKGVFPYNYLDTLEKLNNECLPSKMDFYDSMQDTSISDADYQRANDIWHKFSCKNLGEYSDLYLKVDVILLCDVFENFRNLCLNTYKLDPVHFYSLPGLSWQAMLKFTNVQLELLTDCSMVLFFQRNIRGGYAGVVQRFAQANNKYIPSNYNNSQATSYISYWDANNLYGYALSEKLPISNFRWLSQNEIDSFNINNYTDSDDQGYVLEVDIHYPKHLHDLHNDFPMCIEKMKPPNSKCKKLLQTFFDKQNYVIHIKTLKQCIENGLELSKIHRILTFKQSAWMKPFIDFNTRLRQSAANAFEKDMYKLINNANYGKCIENIEKRVNVNLVNSWKDLGHKKGVEKLVSQPNFHSISIFDENFAAVQLLKSQIYYDKPIYAGFAVLEIAKFVIFDTSNYSIDNIFEMPLVNKAIPALMKDEVCGKIIWEFVGLKAKMYEVNIEGSLIMKKAKGVKKNVIKSLTEKDFKYVLNENEIVLKRQNVFRSLKHIIYSQCINKIALSADDDKRFHIPETYKTLAWGHYKITTDNTNNNLRREGAGGGGGGGGGGRGGMDNSSESKMAVVQLKPGNKIKVLSAFELIQLANVVQATAEENWHSSIANLEEKWRTSNTGVFDSDLFNIVACPLSEILNYPKTIDPNNGNNEEIYHTGKTLALEVQKRRDIFKEPKKRRIVMEKGKKRQRKRNEKESYALISPPLPSSPPPPPPPPPTTAKNEQCCYLFDNIYKELGIKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-