Acya024618.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- -
- Assembly
- GCA_947389935.1
- Location
- OX376710.1:9946700-9948832[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-10 1.4e-07 32.6 0.0 2 40 28 66 27 70 0.90
Sequence Information
- Coding Sequence
- ATGTTGATTCAAGGAAAAGTAAGAAAAAGAATAACACCAAGAAACGAAAAGGTCGCGAAAAGAAAATTATTTAACTATACTGAAGGTTATTTAAAAGAAGCACTTCATCAAATTCGTTCGAATAAAATTTCAATTAGGGAGGCTAGCCGAATGTTTAAAGTACCAAGATCCACCCTTCAGGATCGGCTACATGGTAGGCGTTCTGAAAATTTAAAAAAGACGGGTCCTCAGCCTATCATGGGTATTGAGGGCGAAAAGAGGATCGCTGAATGGACAATTAACATTGCAAAATGCGGATTTCCTATCAAAAAAGAAAATTTAATTGAAACAGTTACTAAAATAGCGCGAGACCAAGGAAAACTTGATCTTTTTGTAAATAAAAGACCGGGCATTAGATGGTACAAAAGTTTTTTAAAAAGACATCCAGAAATATCAGTCCGAGAAGCGGAAGGAATTAATAAAGCACGTGCCGTTGTGACAGAGCAGTTCATAAgatcatggtttaaagatctaaatgaatttcttgaaaacagagattgcagggagattatggacgatccccaaaggatatttaatggtgatgagaccggtttcagcttgtgccccaagacaggcaaggtactcgcaccacgtggatggaagaatctatatcaaataaaagcagggaacaaggacaacataacagttctgatagtttttaatgccagtggtaatatttccccaccactggttattttcccttatgtaagaccaccaaaaactttggtcaaaagcatgcccgaaaattggatacttgccaagtctgagaccggctggatgcgcggggatgttttcttcgaatacatatgtaatgactttaataaatggttaaatgaaaattccattaaaaggcctataatattatttattgatggtcataaaagtcatatgacgttaccattaagccagttttgtgacgaaaatggcataattctttatgcgttaccaccaaatacgacgcatttgctacaaccggctgacgtgagcgtcttcaagccaataaaagaagaatggcgtaaaactgtattaaaatggcaaagcaaaccagaaaatgccaatgccgtcatcacaaaattaaacttttgctccattttccaaaatactttggaaatgacgagcatgggagactatattaaaaacggatttaggaaatgtggtgtctatcctttggatcccgatcaagtagattttaccaaatgtgttaaaaatactttagaaaaTCAGCATAAGCTTAATGATAAGTCGGACACATTTACGTCGAGAGAACTACTGTCAGCTCAAGATTTCAGATCAGCGGAGAAAGTCATAAAAGCGATTCAAGATCGCCTTTACGAATATGGTATAAGTGCTAACGTAGTAACAAATGAAATAAAATATCTTGAACAAAATATGAATTCGACTACAGTTAGTCAAACTGCAAATGACGTCCAATTAACGGTTGACGTTGGCACAATTGTCTCTATAGATGATGTGAATATCGTCGATATGCTTTTTGTTAGTCAAACGGACGATAACGCTTTGTCACATATCTTTCCTTCTGATGTCCTTTATAACGAAGACTTAAACAAACCCCCCGAAAATAAAGTGCCTGGTGGCGAGTCATCGCATAAAGAGGGAGAAACTTATATTGAAAAGATAATTTCTTCAGAAGTTCCTTCTACCAACACCTCTGAAAACGAAAAGTCTGATCAGGAGCCTTTGGATCAAATGAAAGTACCTCCTGAAGTTATACCTGCTGAAGATCATACTGTTAGTGAAATCTCAAATCGCGATTGTACAACAAACATGACAGAATCATTTGCCAACTATGGAGATGTTCCCGCTGTCGATTCTATTGATAATATTCAGCACAAAACCCCTGAAAAAGAAGTATCTGATCATCAATCTCCTGAAAAAGTGAAAGAAACGTCTCCCACTACTCCATTTAGCAAGCATTTAGTATTTCCTGCATCGACCGATCAAAAGCAGAACTTAAAAAAAAAAAAGAAAAGTTACCTAGCGCAATCTCAAGTAAAGAATGGAGAAAATACTATAAAAAAAAAGATGAGGAGAAGATTAAGAAACTTGAGAATATTCGTAAAAGAAAAGAGCTAA
- Protein Sequence
- MLIQGKVRKRITPRNEKVAKRKLFNYTEGYLKEALHQIRSNKISIREASRMFKVPRSTLQDRLHGRRSENLKKTGPQPIMGIEGEKRIAEWTINIAKCGFPIKKENLIETVTKIARDQGKLDLFVNKRPGIRWYKSFLKRHPEISVREAEGINKARAVVTEQFIRSWFKDLNEFLENRDCREIMDDPQRIFNGDETGFSLCPKTGKVLAPRGWKNLYQIKAGNKDNITVLIVFNASGNISPPLVIFPYVRPPKTLVKSMPENWILAKSETGWMRGDVFFEYICNDFNKWLNENSIKRPIILFIDGHKSHMTLPLSQFCDENGIILYALPPNTTHLLQPADVSVFKPIKEEWRKTVLKWQSKPENANAVITKLNFCSIFQNTLEMTSMGDYIKNGFRKCGVYPLDPDQVDFTKCVKNTLENQHKLNDKSDTFTSRELLSAQDFRSAEKVIKAIQDRLYEYGISANVVTNEIKYLEQNMNSTTVSQTANDVQLTVDVGTIVSIDDVNIVDMLFVSQTDDNALSHIFPSDVLYNEDLNKPPENKVPGGESSHKEGETYIEKIISSEVPSTNTSENEKSDQEPLDQMKVPPEVIPAEDHTVSEISNRDCTTNMTESFANYGDVPAVDSIDNIQHKTPEKEVSDHQSPEKVKETSPTTPFSKHLVFPASTDQKQNLKKKKKSYLAQSQVKNGENTIKKKMRRRLRNLRIFVKEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030932; iTF_00030935;
- 90% Identity
- iTF_00030932;
- 80% Identity
- -