Abig013717.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28846159-28850668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00032 0.023 15.4 0.3 3 23 65 85 64 85 0.98 2 16 0.23 16 6.5 0.5 1 23 117 139 117 139 0.95 3 16 0.35 24 5.9 2.5 1 23 145 168 145 168 0.96 4 16 0.00045 0.031 15.0 2.0 1 23 174 196 174 196 0.96 5 16 0.04 2.8 8.8 4.8 3 23 206 226 205 227 0.94 6 16 2.8e-05 0.002 18.8 1.2 1 23 247 269 247 269 0.98 7 16 0.0014 0.099 13.4 6.2 1 23 275 297 275 297 0.98 8 16 0.0024 0.17 12.7 0.7 3 23 497 517 496 517 0.97 9 16 8.1 5.7e+02 1.6 2.2 1 17 521 537 521 544 0.76 10 16 0.029 2 9.3 0.4 2 23 550 571 549 571 0.95 11 16 0.00019 0.013 16.1 0.5 3 23 620 640 619 640 0.97 12 16 0.4 28 5.7 2.6 1 23 644 666 644 667 0.93 13 16 0.016 1.1 10.1 0.4 1 23 672 694 672 694 0.97 14 16 8.7 6.1e+02 1.5 1.1 1 12 700 711 700 714 0.84 15 16 0.31 21 6.1 0.1 1 19 790 808 790 809 0.95 16 16 1.2 84 4.2 1.0 1 20 818 837 818 838 0.93
Sequence Information
- Coding Sequence
- ATGAATGAAACAATGACTGGTGTCGTGTACTGTTCCACAAGTCCagATCAGAATCACATATCGTGTACCGAAAAATTCACAAAACACGAACAGGCCAGGCATTGTTACAAAGTACATAATTGTAATACGTTTATTCCAGGGACATTGCAAGAAAATCTCAAACCCATCAAACGATACGATTACGAAGAAGCATGCGAAATATGTTTTGAATTCTTCAAAACTAAAAACGATTTAGAGATCCATTATGAAACTCACGAAGATAAGTACACTTGTCAAGTGTGTATAACCGGTTTTAAAAGAGTTATGGATTACATTTGTCATGTACGATCGCACaacgaaaaaaaattgttcacTTGTCCGCTTTGCGAACTAACAACGGAAAAGAGAGATCGTATGAGACAGCACTTGGGGAATCATGATCAGTTCAAACGGTACAAGTGTAGCACGTGCGAAAGTCGATTCCCGTATTATTCGAGGTATTATGAACATATACAGAATTACCACAGTGGCAGAAAGGGCTTCGAATGTGACATTTGCGGTAAAAGATTGAGATCTTCGGGAAGATTACGCCATCATAAACTGAATCACAAATGGCAAGCAACGGGAGAAAAGCATTGTAAAGAGTGTAATTATATATTTGCTTCTCGTGAATCAATGAGGTATCATTATTCGAAACATCATCCGTTGTCTTCCCATTCAATAAAAAATCACTCGTTGAAACACGTACCTAAAGCGATGTTTGTTTGTAACGTTTGTGGAAAGAACTTTATGGCAAGAAACTCGTTGACCAAGCACCTTAAGAAACACAACGGCGATAAACGATTCAAGTGTTCATACTGCGACAAAAAGTTCGTGACGAACCACGAAAAGTGCATACATGAACGGGTGCACACGGGGGATAAACCggAAAATtggaatgtaaaaattgaaatcgGTGAATGTAAAATAGAGGAACCATGGGATGATGAAGAGATAATGAAGGAAACAATAACTGGTAGCGTGTTCTGTTCCATCTGTCCAAGTGACACATTTGATAGCGAAGATCATCACCAAAGATATGTCGccttaaaagaaacaaaagaattttgttGTCCAATTCACTCATCGTGTACCGAGAAATTCACAAAACACGAACTGGTCAAGCACTGTTTTGAACACGGaatgaaagtaaaaaattggaaaacgttTTTTCAAGAAAATCACAACGATATCGGACGTAGCGAGGAAGCATGCGAAAGTGTAGTGGATGAGTTCTGTTCCATTTGTCCAGGTAAAACATTTGATAGCGAAGATCTGCATCAAAAGCGTGTGGCTAATGAAAGAAAGGAATTCTATTGTCGAAGTCATGCAACGTGTACCGAAAAATTCACAAAACATGAATTGGCCAGACACTGCTACGAGCATggaataaaaatacaaaattggaATACATATCTGTGTGAGGCATTGCCAGAAAATCCCAAACTCATCGAGGGTAACGCGGAATCATGCGAATTATGCTTTgaattgttcaaaaataaaaacgatctAGAAATCCATTACCAAACTCACAAAGATATGTACACGTGCGAAATGTGTAAAGTtggttttaaaaaagttatggATTACATTTGTCATGCCCAAGCTCATCACGAATATAAACTGCTCACTTGTCCCCTTTGCGGACTTACAACGGATAAAAAATATCGTATGAAACAGCACATAGGGAGTCACGATGAGTTCAAGCGATACAAGTGTATAAGGTGCGAAAGTCGGTTTCGGTATTACCCGAGTTATTACGACCATGTCAAGAAGTCTTTGAATAGTTTCATAGTAACATATAAAGACGATAAACGATGCAAGCGTTACGAAGAAGCTTGCGGGATATGTTTTGAATTTTTCAAGaataaaaccgatttaaaaGCCCATTACGAAACTCACGAAGATGAGTACACATGCGAAGTGTGTAATGTAGGGTTTAAAAGAGTTATGGATTACATTTGTCATGCACGTTCGCATCACGAAAATAAATTGTTCACTTGTCCCCTTTGCGGACTAACAACGGAAAAGAGGGATCGTATAAGAAAACATATAGACAATCATGATCAATTCAAACGATACAAGTGTAACACGTGTGAAAGTCGCTTCCCATATTACTCTTGGGAATCCTGCAGTGTCAAAATTGAAATTGGTGAATGTAAAATAGAAGACCCACCCAAATTATTGCAGAGGACACACAAACCTATCGAGTGTTACATAGAATTATGCGATATAGAAACTCATTACGAAACTCACCAAGATGAGTACGCATGCGAAGTGTGTAAAATTGGTTTTGAAAGAGTTATGGATTCCATTTGTCATGCACGATCGCATGACGATAAGCAATTGTTCACTTGTCCTCTTTGCGAACTAACAACGGAAAAGAGGGAAAGTATGAGACAGCACGTATGGGATCATGTTCAGTTCACACGGTACAAGTGTAGCACGTGCGAAAGTCGATTCCCGTATTATTCGAGATATTATGAACATATAGAATGTTGTTTCAGTGACACAAATTTTGATAACGTTACAGTAGACGGTATAAAACATGAGCAGGAAGAAAGATATCGTGAAAACAAGTGTGAAGAAATTAACAAGCTCAAAAAAGATAGCAAGTCCGTTCGGAAGAATGCTCCGAGTAAAGAGCGTACTCGAATATATTGGGAGCGACATAAAGAAAAAATCAACCAGCAAAGAAGGGAACGGAGGAAACTTCAACAAAATAAACAGCGAATAGCAGACGAAacgataatataa
- Protein Sequence
- MNETMTGVVYCSTSPDQNHISCTEKFTKHEQARHCYKVHNCNTFIPGTLQENLKPIKRYDYEEACEICFEFFKTKNDLEIHYETHEDKYTCQVCITGFKRVMDYICHVRSHNEKKLFTCPLCELTTEKRDRMRQHLGNHDQFKRYKCSTCESRFPYYSRYYEHIQNYHSGRKGFECDICGKRLRSSGRLRHHKLNHKWQATGEKHCKECNYIFASRESMRYHYSKHHPLSSHSIKNHSLKHVPKAMFVCNVCGKNFMARNSLTKHLKKHNGDKRFKCSYCDKKFVTNHEKCIHERVHTGDKPENWNVKIEIGECKIEEPWDDEEIMKETITGSVFCSICPSDTFDSEDHHQRYVALKETKEFCCPIHSSCTEKFTKHELVKHCFEHGMKVKNWKTFFQENHNDIGRSEEACESVVDEFCSICPGKTFDSEDLHQKRVANERKEFYCRSHATCTEKFTKHELARHCYEHGIKIQNWNTYLCEALPENPKLIEGNAESCELCFELFKNKNDLEIHYQTHKDMYTCEMCKVGFKKVMDYICHAQAHHEYKLLTCPLCGLTTDKKYRMKQHIGSHDEFKRYKCIRCESRFRYYPSYYDHVKKSLNSFIVTYKDDKRCKRYEEACGICFEFFKNKTDLKAHYETHEDEYTCEVCNVGFKRVMDYICHARSHHENKLFTCPLCGLTTEKRDRIRKHIDNHDQFKRYKCNTCESRFPYYSWESCSVKIEIGECKIEDPPKLLQRTHKPIECYIELCDIETHYETHQDEYACEVCKIGFERVMDSICHARSHDDKQLFTCPLCELTTEKRESMRQHVWDHVQFTRYKCSTCESRFPYYSRYYEHIECCFSDTNFDNVTVDGIKHEQEERYRENKCEEINKLKKDSKSVRKNAPSKERTRIYWERHKEKINQQRRERRKLQQNKQRIADETII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -