Abig013706.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28783830-28787187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.062 4.3 8.2 1.2 3 23 64 85 62 85 0.93 2 16 0.0049 0.34 11.7 3.1 3 23 94 114 92 115 0.94 3 16 0.008 0.56 11.0 2.1 1 23 120 142 120 142 0.97 4 16 2.1 1.5e+02 3.4 1.0 1 12 142 153 142 158 0.84 5 16 6.7 4.7e+02 1.8 0.3 2 11 179 188 178 190 0.88 6 16 0.75 53 4.8 0.5 3 12 314 323 312 325 0.89 7 16 0.0023 0.16 12.7 0.2 3 23 391 411 390 411 0.98 8 16 0.0013 0.089 13.5 0.7 1 23 415 437 415 437 0.99 9 16 6.1 4.3e+02 2.0 0.3 1 8 443 450 443 466 0.76 10 16 0.001 0.071 13.9 2.0 1 23 472 495 472 495 0.96 11 16 0.0051 0.36 11.7 4.0 1 23 501 524 501 524 0.97 12 16 0.16 11 7.0 0.7 2 23 533 555 532 555 0.96 13 16 3e-05 0.0021 18.7 1.1 2 23 561 582 560 582 0.96 14 16 0.0031 0.22 12.3 2.2 1 23 588 610 588 610 0.97 15 16 2e-06 0.00014 22.4 2.2 1 23 616 638 616 638 0.98 16 16 1.3e-05 0.0009 19.8 1.9 1 21 644 664 644 665 0.95
Sequence Information
- Coding Sequence
- ATGTATATGTTATGCTATTCGAAAACAGAGACATGGCCTAAAGAGGAAAAATATGATCCTTTATTGTTTATTCGAGTCAAAGACGAAATCAAAATTGATTCGTATTTACCGAAACTCTCTGCAGAATTGTCTCAACTAGATAACGTCGATAACGTATCTACAAAAATATCTCAACTAGATTCGATTGCATGTCAATTTTGCGGTAAACTATACTCTTCCTGGTATTGTATGTCCATTCATAAGAACGAATATCACGTGAAACAGTCGGGACACATGGACTGCAGTATATGCAAGAAAAGAACCAGAAACGTCACCGAAATGCGAAAACATCTTCGTGAACATCATTGTcttgaattgtttatttgtaatttttgcgATGAACAGTGCCAATCGAAGCAAGATCTCAACTTGCATCTGTTGAAGCACAGATGTGCATTTTGTGGCGAAGATTTTAGCAATGACAATAATCAGAGGACTTTGCATGAAGTGATCCATTACGAACTAAACAGTAACGATTGTCCTTACTGCAAGAAAAGGTGTCCTGTTTGTACAGAACCATTTGCGAAATTACTGCCCAATGAATATCAAAAATACAACATTTATGTATTGGCATTATACTTCTTTTGGCACGTCGAGAGTAAAGTGGATGACCCATCCGAAATACAAATGTACAATATTGAAAGATGTGCGATTTTTTCACCGAAAGAAGAACGAAAAGGAAGACAAAAAAAGAAACTAGCATCCTGTTTAGAAACTCCTCAAACAAGAAATCGTAGAATACGAAAAATTGAGTCTGGTCCTTTACCCAGACAAAAACTAGAAAGGATTTGTAAAAAGAATACAGGGGCTGTTCAGAATTTAACTGAGGATGAGAATATTGATTCGTCAGATGACGAAAGTAAGATTGATGAcggtaaaaacaaaaattcaacaattttttgtaGACACTGCAATAAGAGGTTCAATGACGAAATAGAGCACGACAGTTTTACAGCATccgaagaaaaaaaatattactgtcATAATCATCCAACTTGTACAGAAAAATATACAAGACATGAACTTATTAAGCATTGTAAGCTTTCAGGAGTTGAAGTACCAAACTATCGCAAATTTTTCTTGAAAGCCCTATCAAAAAATCCGAGGATGGAACATCAAGAGAAATTATTGTGCGAAATCTGCTCCGAATCGTTTGACCTTAAGAGAAGTCTCGAGGAACATTACGAAACCCACGAAGATCAGTTTACATGTGACGTGTGTCTGAAAGGTTTCAAAAAGATATTGGATTATACAATTCATATGCAAACTCACAGCGAAGATAAAATGTTCAAGTGTCCCCTGTGCGATGTCAAGAAAGAAAAGGGCTACCAAATACGCATGCATATCCTCCAAACTCACGAACAGTTCAAAAAGTTCAAGTGTGACGTATGTAATAAACGTTTTGCTAATTACCCTTTCTTCCAAGAACACGTCAAGTATTACCACAGCGGAGAGAAACCATTCAAATGTGAATTTTGCAGTAAAAAATACTATTACTCCCAATACTTGGTAACCCACCAGAAATACGAACACTTCGATAAACCTTCTGAACAAGTGCAATGTTTCTTGTGTAATATTAAATTGCCGACCATTAGAGCCATGCAAAGGCACCGACGGTCCCGTCATCCGAAAGAGCTACTCATTTGTGACATTTgcggaaaatattttaaatcgaaAAAGAATTTCAGTTTGCATTCGCGGGTCCATTCCGGTGACAAAAGGCACAAGTGCTCTTACTGTGAGAAACGATTCATCAGAGTCGAAGCTAAAAAGGAACACGAAAGAATTCACACCGGTGACAGACCATATCGCTGTTCCTACTGTGGAAAGAGTTTCACCCAGAGGACCAGTATGGTCATTCACACACGTAACCACACAGGTGAACGTCCGTACGTTTGTCATCTATGTAACAAAGGATATACGTCAAAAGCAAATTTAACACATCATCTGAAAAGTTGTTTAGGATCCGGGTCCCTCAAATGA
- Protein Sequence
- MYMLCYSKTETWPKEEKYDPLLFIRVKDEIKIDSYLPKLSAELSQLDNVDNVSTKISQLDSIACQFCGKLYSSWYCMSIHKNEYHVKQSGHMDCSICKKRTRNVTEMRKHLREHHCLELFICNFCDEQCQSKQDLNLHLLKHRCAFCGEDFSNDNNQRTLHEVIHYELNSNDCPYCKKRCPVCTEPFAKLLPNEYQKYNIYVLALYFFWHVESKVDDPSEIQMYNIERCAIFSPKEERKGRQKKKLASCLETPQTRNRRIRKIESGPLPRQKLERICKKNTGAVQNLTEDENIDSSDDESKIDDGKNKNSTIFCRHCNKRFNDEIEHDSFTASEEKKYYCHNHPTCTEKYTRHELIKHCKLSGVEVPNYRKFFLKALSKNPRMEHQEKLLCEICSESFDLKRSLEEHYETHEDQFTCDVCLKGFKKILDYTIHMQTHSEDKMFKCPLCDVKKEKGYQIRMHILQTHEQFKKFKCDVCNKRFANYPFFQEHVKYYHSGEKPFKCEFCSKKYYYSQYLVTHQKYEHFDKPSEQVQCFLCNIKLPTIRAMQRHRRSRHPKELLICDICGKYFKSKKNFSLHSRVHSGDKRHKCSYCEKRFIRVEAKKEHERIHTGDRPYRCSYCGKSFTQRTSMVIHTRNHTGERPYVCHLCNKGYTSKANLTHHLKSCLGSGSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -