Abig016012.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998125.1:7887097-7889257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.046 3.2 8.7 5.1 1 20 338 357 338 360 0.95 2 11 0.00053 0.037 14.7 0.7 1 23 371 394 371 394 0.96 3 11 0.0014 0.095 13.5 5.1 1 23 402 424 402 424 0.99 4 11 2.4e-05 0.0016 19.0 2.1 1 23 430 452 430 452 0.97 5 11 0.0015 0.1 13.3 4.2 1 23 458 481 458 481 0.98 6 11 1.9 1.3e+02 3.6 0.1 2 23 492 514 491 514 0.88 7 11 0.0022 0.16 12.8 4.6 1 23 524 546 524 546 0.98 8 11 0.00023 0.016 15.9 5.9 1 23 558 581 558 581 0.96 9 11 3.7e-05 0.0026 18.4 2.1 1 23 589 611 589 611 0.98 10 11 0.00031 0.022 15.5 2.0 3 23 619 639 617 639 0.98 11 11 1.3e-05 0.0009 19.8 1.9 1 23 645 668 645 668 0.98
Sequence Information
- Coding Sequence
- atgcAGTCAGAAATCGTGGAAAATACTTTAGCAGAAGTTTGTTGTGCATGTTTAACTACAAATATTCATTTAACAAAAACTGCCGAATCTGATACCCATAATATCGACACTCTTACAAAGTTAAGATTCTGTATCCCAGAAGTGACCTGGACAAAAGGCTACATATGTAATCATTGTTTAGATACTTTAAATCAGAGCTATTTATTCAAAGAACTTTGTATACGAACTAATCAATCTCATTTTCTAAAGGATTGTCAGATATTTGTCAAAAAGGAAGAAACTTGTGTAAGTGATCACTTAGTATCAGATGTTCTAGATTATAGTAATGATCCACAGTCAGTACTAGTGGAAAATACTTCAGCAGAAGTTTGTTGTGCATGTGCAACCAGAAATATTAACATTACAAAAACATCTGACTTTGATTTTAATAACATGGACAGTCTTACAAAGTTAAGATTTTGTATCCCAGAAACGACCTGGACAAAAGGCTACATATGTGACCAATGCTTGGACACTATAAATCAATGCTATTTATTTAAGGAACACTGCTTAAGAATCAATCAGTCCCTCTTCCTAAAAGATTGTGAAGTGTTGGTCAAAAAGGAAGAAATTTGTGTTAATGATCACTTATTAGAAGCAAATGATCTTGAATATGATAATGGTCTAAAGGAAAACATAGGTAGTGTTTGTAATAAAGATTATGGCTATGACAGctttgacaacaattttttaaGAACTGTTAGTGCCTCAGACAATTGTAAAGATGTCAAAATTCAAAGTAATGTAGAAAAAATTGAGTTACAACAGGAAAATCATGACAACAGTTGTACTGAAAAGATTTTCATAAAAAAGGAGGAATCAAACGACTCTATAATTGTAGAAGTATCTGCATACAAGGGTAACAGCAACAGAAGTCCAACTTACAAAATTTGTAACGAATTTACAGGAGATAATAAAGAACTGGTAACCCAGGTAGCTGATATTCATAAAATGGACCTCAAAATTAAACATTACAAATGTGACCAATGTAACGTAAGGTGCAAATCATCGATAGATTTAACTCGTCACAAGATTTgtcattcagaaaataaaacattggaAAATCGGAATTTTCAGTGCGAAATCTGCTCCAAAAAGCTCTCTGAACAATACAAACTAAAGATTCACACACTTGTTATGCACACAGATCCTAACTTATGGAAGTATAAGTGTCTTTACTGTGACCAAAAGTGTGCCACAAAGTCAAGATATGACAGGCATATTCGACGACACATGGAGGACAAACCTTTTGCGTGTCACCTGTGCGATAAGAAGTTTGCTGAAAAAAATACGTTGAACAATCATTTATTGACGCATTCAAATGTGCGCAACTTCAAGTGTGATCATTGCGATAACGAATACAAGATGAAATACACTTTGAAGATGCACCTAAAAAAGGTCCATGACGTTGGAGACGCCAAAATTCCAGGTCTAACTTGCGAAATTTGTAACGAGTTCACAGGAGCTTATAAGAAGCTGATGGCTCATGTAGCTAATATTCACAAAGTAGACCCCAAAACAATAAATCCTTATAAGTGTGACCATTGCAATGTTAAGTACAAATCATCAATGGAACTAGCGCATCACAAGATTCGTCATTCGAAAAGAGAAAGATCTGCGAACGAGGGAAACTTCAAATGCGAAATGTGCTCTAAAGAATTCATTAGAAAATGCCACTTGAAAACCCACATACTGCTCAAACATACTGACCGCAATTTATGGAAATACACGTGCTCTTTCTGCGACCAAAAGTACGCCACAAAGTGGGATTACAACAGGCATATCCGATATCACAGGGGGGAGAAGCCTTTCGGTTGTCATCTGTGTGACCAAAAGTTTACAGAGAAAAGTGTCCTTCAGAATCACTTATTAACCCATTCGAACGTGCGTAACTACAAATGTGATTATTGTGATAAGGAGTACAAGCTAAAATACACGTTGAAGGTGCATCTGCAGAAGGTACACAATGTGGGAGACGCCAAAGTTCCCaaagaaattaaacaaatatcGTTGTGA
- Protein Sequence
- MQSEIVENTLAEVCCACLTTNIHLTKTAESDTHNIDTLTKLRFCIPEVTWTKGYICNHCLDTLNQSYLFKELCIRTNQSHFLKDCQIFVKKEETCVSDHLVSDVLDYSNDPQSVLVENTSAEVCCACATRNINITKTSDFDFNNMDSLTKLRFCIPETTWTKGYICDQCLDTINQCYLFKEHCLRINQSLFLKDCEVLVKKEEICVNDHLLEANDLEYDNGLKENIGSVCNKDYGYDSFDNNFLRTVSASDNCKDVKIQSNVEKIELQQENHDNSCTEKIFIKKEESNDSIIVEVSAYKGNSNRSPTYKICNEFTGDNKELVTQVADIHKMDLKIKHYKCDQCNVRCKSSIDLTRHKICHSENKTLENRNFQCEICSKKLSEQYKLKIHTLVMHTDPNLWKYKCLYCDQKCATKSRYDRHIRRHMEDKPFACHLCDKKFAEKNTLNNHLLTHSNVRNFKCDHCDNEYKMKYTLKMHLKKVHDVGDAKIPGLTCEICNEFTGAYKKLMAHVANIHKVDPKTINPYKCDHCNVKYKSSMELAHHKIRHSKRERSANEGNFKCEMCSKEFIRKCHLKTHILLKHTDRNLWKYTCSFCDQKYATKWDYNRHIRYHRGEKPFGCHLCDQKFTEKSVLQNHLLTHSNVRNYKCDYCDKEYKLKYTLKVHLQKVHNVGDAKVPKEIKQISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -