Abig017761.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- zfh1
- Assembly
- GCA_963921985.1
- Location
- OY998126.1:16213331-16231856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00098 0.068 13.9 1.6 2 23 30 52 29 52 0.96 2 9 0.00083 0.058 14.1 0.5 3 23 86 106 84 106 0.95 3 9 1.3e-05 0.00093 19.8 0.6 3 23 114 134 113 134 0.97 4 9 1.6e-06 0.00011 22.7 5.9 1 23 143 165 143 165 0.99 5 9 6.6e-05 0.0046 17.6 1.0 1 21 171 191 171 192 0.95 6 9 0.0099 0.69 10.7 1.1 3 21 425 443 423 444 0.93 7 9 9e-06 0.00063 20.3 1.3 1 23 795 817 795 817 0.94 8 9 0.00048 0.033 14.9 12.2 1 23 823 845 823 845 0.98 9 9 0.048 3.4 8.6 7.0 1 21 851 871 851 872 0.96
Sequence Information
- Coding Sequence
- ATGGATGTTACAAGAAGCCAAGTTCCTTTACTTGCAAACGGCGTTCCTAACGAAGAAGATGTCCGACCGGGCACAgattgtttcatcaagtgccctCAATGCCAAAAAAGTTGTCAGACATTTCAATCTCTCAAGGAGCACATGGAGGTGGCGCACGCTGACGGGAACGTAGTCCTGGAAAACGGCGTAGGACTGTCTCTCCCCAGTGCATCCCCCACACCAAGTCTAACGCCCGGAAACGGAGGTCCTTACGGCTGCTCCCAGTGCACCACCTCCTTCGGTACCAAAGATCAGTTGGAAAAACATGAACTTTTGCACTCGCCAAACGCACAAGTGgcATGTAAAATTTGTAACAAAACATTTGCAAATGTTTATCGCTTACAACGACACATGATCAGTCACGATGAAAGTGCTGTCTTACGAAAATTcaaatgtacagaatgtgataaAGCCTTCAAATTCAAACACCATCTCAAGGAGCATATACGAATACACAGCGGCGAAAAACCATTCGAATGTGGAAACTGCGGGAAAAGATTTTCGCATTCCGGTTCTTATTCTAGTCACATGACATCGAAAAAATGCCTAGTGATGAATCTCAAGTTGGGGAGGACGCGCGGTCCACCCCCAAATTCCCTCATCGACAAAAATAGAGTTCACAAAAGGCCTTCGAACAATTCTTTAAACAATAACATCGCAACAAGCCCTAACCATAACACGTACTTGCCAATGCTGGACAAATTTAGCGAAGCTGCGGCAACAGCATTTTTGCAAAATTCAATAGCCTCCACCCCCAGAATGCATCCTTTCTATATGACCTCTCCCAATATGCTTAGTTCTTCCGGGGTAGCAATTAGCCCCTATTCGTTACCGTACATTCTAGAACAGCTCCAAGGAAACTCACCCCATAGACCTCCAGCACCCACGGAACCGGAACTAAACCTGAATGAATCTATACAGAGAAGTGCCTCACCACCCACTAATTCGGGTGGAATCGACGATCAACCGGGAGGTCCAAAATCCAACGCTTCATCTTGTGGAGATTTAGTAATGGACGAAGGCGACGATAACAATAAAGCTGAATCTCGTGATACATCGAAACCTAACCAATGTTATGACAACGGAAGTGATTTTGAAGCGGTAAAAAGGATTTTAGAAACTGTTAATGTCACTGTAaccaaacaactactccaagccAACATGCAAAAATACTCGGAAACTAATACCAACGAATCTCTACGACCTGATGAAGAAaccaaagaaaatattttttgttcaacGTGCAAACAGACATTTAATAATCAGGATGATCTAGACGAGCATCTGTGCGACCAAACAGAAGTGAAAAGCGAAGGACTGGCGGCAAAACTAGAAGAAGCTGTTGGTATAAAATCGGATGATGGTCAAAATGGAAATCTCAGCTGTACGGACGAAGATCAGGACTATTATAAACAGGAAAAACTTTGTGATTACGAAATGGACTGTGAATCGGTAACTACAAGTGATCACGTATCTGAGGATGGTCGAAAGGTGAGAGTCAGATCGCTGATAGCAGACAAACAACTTCGGGTTTTGAAAGATCATTACACTTTAAATCCACGCCCAAAGCGTGAAGAACTCGTTAAAATTGCCGAAAAAATCAACTTTCCTGTTCGAGTGGTTCAAGTGTGGTTCCAAAATACAAGGGCCAGAGATAGAAGGGAAGGACGAATGGCAAACATACCGTACAGTTTGGGCAGTACCATGCAACATAGACTTCCTCCAGTGTTTGTGCCTTCAAACCAACAACTAACAAACCAAACGACTTCGTACTCCTTACTACCTTCGCCTCATTACCCAATGGAACAACCTTTAGATCTCTCAACAAAAAAAAGTACCCATTCGGTAACTTCATCTCCCGCTGCCTCACCCCAAAGACCGACTTCTTCTAACCACCATTCCGATTCAGGAGAAGAAGCTGTAAACTTAAGTTGCAAATCTTCTCGGAGCCCTACCCCTGTCCAACAACCTCTTCAAAACCATTACCAAAACTCCAACTCATCTTCCGACATTCAAAGAACACCATCACCTATGGACTTCAACAATGGAAGTAAACTAGCGCGGATTCTTGCCCAGCCAGTCGAACTGGGAATGCCCTCCATGGGACTCGTACGCATAGAAGGACTAATACAAATGGGCGCCTCTGAACTACCGAACCTTTCGCAACTGTTAAACCATCGACTGTCTAGAATGAGCCCTGGATCAGAGAAGAACTTGTGGGTGGAAGACAACGAGCCCATGATCGCTCACGATCTCAGCCAAGACGAGAAGAAAATGAAACCGATATTGAAGAATTTGGGTAGCCCCAGTCTTGGTGCTTCTGGTGGAGAAGTTGAAGGACAATTTTCCTGTGATCAATGTGATAAAGCATTCTCTAAACAGAGTTCCTTAGCACGACACAAATACGAACACTCAGGTCAGCGTCCTCACAAATGCCACGAATGTCCAAAAGCATTCAAGCACAAGCATCATCTGACAGAACACAAGAGGTTGCATAGCGGGGAGAAGCCGTTTCAATGTTGTAAGTGTCTCAAAAGATTTTCTCACTCCGGGTCTTATAGTCAACACATGAATCACCGGTATTCTTATTGCAAACCTTATAGAGAATAA
- Protein Sequence
- MDVTRSQVPLLANGVPNEEDVRPGTDCFIKCPQCQKSCQTFQSLKEHMEVAHADGNVVLENGVGLSLPSASPTPSLTPGNGGPYGCSQCTTSFGTKDQLEKHELLHSPNAQVACKICNKTFANVYRLQRHMISHDESAVLRKFKCTECDKAFKFKHHLKEHIRIHSGEKPFECGNCGKRFSHSGSYSSHMTSKKCLVMNLKLGRTRGPPPNSLIDKNRVHKRPSNNSLNNNIATSPNHNTYLPMLDKFSEAAATAFLQNSIASTPRMHPFYMTSPNMLSSSGVAISPYSLPYILEQLQGNSPHRPPAPTEPELNLNESIQRSASPPTNSGGIDDQPGGPKSNASSCGDLVMDEGDDNNKAESRDTSKPNQCYDNGSDFEAVKRILETVNVTVTKQLLQANMQKYSETNTNESLRPDEETKENIFCSTCKQTFNNQDDLDEHLCDQTEVKSEGLAAKLEEAVGIKSDDGQNGNLSCTDEDQDYYKQEKLCDYEMDCESVTTSDHVSEDGRKVRVRSLIADKQLRVLKDHYTLNPRPKREELVKIAEKINFPVRVVQVWFQNTRARDRREGRMANIPYSLGSTMQHRLPPVFVPSNQQLTNQTTSYSLLPSPHYPMEQPLDLSTKKSTHSVTSSPAASPQRPTSSNHHSDSGEEAVNLSCKSSRSPTPVQQPLQNHYQNSNSSSDIQRTPSPMDFNNGSKLARILAQPVELGMPSMGLVRIEGLIQMGASELPNLSQLLNHRLSRMSPGSEKNLWVEDNEPMIAHDLSQDEKKMKPILKNLGSPSLGASGGEVEGQFSCDQCDKAFSKQSSLARHKYEHSGQRPHKCHECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPYRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032367;
- 90% Identity
- iTF_00032367;
- 80% Identity
- iTF_00030093;