Abig013709.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28797748-28802714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00027 0.019 15.7 0.2 1 23 64 86 64 86 0.98 2 20 0.33 23 6.0 6.6 1 23 90 112 90 112 0.97 3 20 1.1 78 4.3 0.3 1 23 118 141 118 141 0.88 4 20 0.035 2.4 9.0 3.6 1 23 147 169 147 169 0.97 5 20 0.0022 0.15 12.8 2.0 2 23 187 209 186 209 0.87 6 20 1.1e-06 7.9e-05 23.2 2.0 2 23 215 236 214 236 0.97 7 20 3.4 2.4e+02 2.7 0.4 2 13 243 254 242 264 0.74 8 20 0.45 32 5.5 1.7 1 10 270 279 270 293 0.75 9 20 0.029 2 9.3 0.5 2 20 300 318 299 320 0.92 10 20 0.79 55 4.8 1.0 2 12 404 414 404 415 0.89 11 20 0.0013 0.093 13.5 0.1 3 23 483 503 482 503 0.96 12 20 3.3 2.3e+02 2.8 2.3 3 23 509 529 507 529 0.88 13 20 6.1 4.3e+02 2.0 0.2 1 9 535 543 535 558 0.70 14 20 0.0084 0.58 11.0 4.1 1 23 564 587 564 587 0.94 15 20 0.00014 0.0097 16.6 0.9 1 23 593 616 593 616 0.97 16 20 0.0085 0.59 11.0 0.8 2 23 625 647 624 647 0.97 17 20 6.3e-08 4.4e-06 27.1 0.2 1 23 652 674 652 674 0.98 18 20 0.00072 0.05 14.3 2.0 1 23 680 702 680 702 0.98 19 20 0.00054 0.038 14.7 4.0 1 23 708 730 708 730 0.98 20 20 0.00014 0.0097 16.6 0.1 1 21 736 756 736 757 0.96
Sequence Information
- Coding Sequence
- ATGGAAAACTCACAGTGGAGTGCAAAtgaaGAACATTCTGAAAATATACTTAACACTTCCGCGACAATTTTTATAGAGGAGATCTCATCAGACGATGATGAAATTGACATAAAAGACGTCAAATTGGTTCCTTGGCACGAAGAACCAAAGATAGAATTTGTGAGTTGCAACAAGCAGCGGCAAGTCGAATATCCATGCGAAATTTGTTTGGAAATGTTCAATAACGCAAACGCGTTACGCAATCACTACAATTATCACGAATCCCGGTACACTTGCAAACAATGCAATCAGAAATTCAAAACGATAATCGACTACATCTGCCACATGCACACGCACGGCCGAGATAAAATGTACAAATGCCCCGATTGTGCTTTCAAACATCCTCAATTGGCCGGATTAGAAATACACCTGTACTCTACTCACACCGAGTACCAAAAGTACAAATGTCAGAAGTGCAGCAAACGCTTCGCATTTTACACAGAGTACGATGAACATAAGAAACTGCATCAGACAGCACCAGAAGTGTTTAAGAAAAAGAAACCAACAAGTTTTTCAATACAGTGCAATCATTGCGGCAAGAAATTTTCAACTATTCGCCTTATGCGTGACCATGATCGCAAAGAACATATTTCGGAAACCGTAGAGTGCAAATTGTGCGGAAGAGACTTTATCAATAAGGAACATCTACTGAAGCACATGCGTAAACATTTGAATGGTACAGAACTGAAGTGTTTATTTTGTGATGAAACGTTCGACACCGGATATATCAAAACAATGCACGAACGGGTTCACATTGAGGACAAGAAATTCCAGTGTTCAAAGTGTAAGAAAGTGTTTCTCTTTTTCCTACCTTACCGAGAGCATGTACGTGTGTATCATAAACCAAACGGGGATGTTGTTTGCCACAACTGCGGAAACGATTTTAAACAAGTTCATCTATTGGAAACGCACGAAAAAGATTGTCTCGCCAAATTGACGCCGACAACATGCAAGGTCTGCAAGGCTGAATGCTCATCGCTTTGGAAATGTGAAGAATATGAAGAATGCAAAGTGATCTTCTCAGATGAAGCAAGCCCGATTTCAAAGACCAAAACGTCTTTTAGCGGTGCATCTAAACGCGACACTAAACATTCTAGACAGAAAAACATTTCtaagaaaaattctaaaaataaattggaagaagtCACATTAGCCTTATCGGCATCCGGATACTGCAAACATTGCCGGAAAACATTTGCTAACGATGAAATACATAAGACATTCGTATCTGAAAACGAAATGAAAAAATACTATTGTAGAGACCATTCGACGTGTACGGAAAAATATACTAGACACGAACTGATCCAACACTGCATAGACACCGGAATTCATATAGCGGATGTTCGAAAATATTTCCAGAAAGCTCGCTGTAAAGCGTCGcgaattaaaaatttagaagGTGAACCGTGCGAAATATGTTTCGAAATATTTCCGAAAAAAGACTTGTTAGAGAAACATTACAACGATCACAAAGACCAACATCTGTGCGAGATTTGCAAATGGGGTTTCAAAAAGATCATGGACTACGTATGTCACATGCAGGAACACAGTGACGACAGGAAGTATGAATGTCCGGTGTGCAATTTACGGAAAGGAAAAATGTACGAAATGCGAATGCACATATTTCAAGCACACGAACAATTCAAAAGGTTCAGGTGTAATGTGTGCGGTAAGAGATTTTCGTTTTACACATTTTATTACGAACATGTTAAATACTTCCACAGCGGTGAGAAACACTTCGTCTGCGACCTGTGCGGCAAAAGGTTCATGTACTCCTGGTACCTAAGTTCCCACAAACAAACAGATCACAATGACAGCCCGAAAAAAATGATGAAATGCACTCTTTGTCCCGTAAAACTTTCTTCTGACAGATCGCTACAAAAACATCTCCAAACGCAACATCTTCAGGCTTATTTCGTTTGCGACATTTGTGGAAGAGGTTTCAAGAGCAAACAAAACCTTAACGCCCATTTGAGAGTGCATCGAGGAGACAAAAGACACAAGTGCTCATATTGCGATAAAATGTTCATAACGACTGGTGCCAAAAAAGAGCACGAACGGGTTCATACCGGCGATAAACCGCACAAGTGCACGTTTTGTTTGAAAGGATTCACGCAACGCAGCAGTTTAGTTATTCATTTTCGAAGTCATACCGGTGAACGTCCTTACATCTGTCAAATATGTAATCGCGGATTTGTATCGAGAACTGCTCTAGTTAATCACATGAAAAATTGCAAAGGACGAACTGAACTCGATGGAGAACAATTTTCAACCTATAGCAATCATTAA
- Protein Sequence
- MENSQWSANEEHSENILNTSATIFIEEISSDDDEIDIKDVKLVPWHEEPKIEFVSCNKQRQVEYPCEICLEMFNNANALRNHYNYHESRYTCKQCNQKFKTIIDYICHMHTHGRDKMYKCPDCAFKHPQLAGLEIHLYSTHTEYQKYKCQKCSKRFAFYTEYDEHKKLHQTAPEVFKKKKPTSFSIQCNHCGKKFSTIRLMRDHDRKEHISETVECKLCGRDFINKEHLLKHMRKHLNGTELKCLFCDETFDTGYIKTMHERVHIEDKKFQCSKCKKVFLFFLPYREHVRVYHKPNGDVVCHNCGNDFKQVHLLETHEKDCLAKLTPTTCKVCKAECSSLWKCEEYEECKVIFSDEASPISKTKTSFSGASKRDTKHSRQKNISKKNSKNKLEEVTLALSASGYCKHCRKTFANDEIHKTFVSENEMKKYYCRDHSTCTEKYTRHELIQHCIDTGIHIADVRKYFQKARCKASRIKNLEGEPCEICFEIFPKKDLLEKHYNDHKDQHLCEICKWGFKKIMDYVCHMQEHSDDRKYECPVCNLRKGKMYEMRMHIFQAHEQFKRFRCNVCGKRFSFYTFYYEHVKYFHSGEKHFVCDLCGKRFMYSWYLSSHKQTDHNDSPKKMMKCTLCPVKLSSDRSLQKHLQTQHLQAYFVCDICGRGFKSKQNLNAHLRVHRGDKRHKCSYCDKMFITTGAKKEHERVHTGDKPHKCTFCLKGFTQRSSLVIHFRSHTGERPYICQICNRGFVSRTALVNHMKNCKGRTELDGEQFSTYSNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -