Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998122.1:10536695-10540104[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.6e-06 0.00011 22.7 3.1 1 23 134 156 134 156 0.98

2 10 5.6e-06 0.00039 21.0 6.1 1 23 162 184 162 184 0.97

3 10 0.00075 0.052 14.3 6.7 1 23 190 212 190 212 0.97

4 10 7.3e-05 0.0051 17.5 1.5 1 23 218 240 218 240 0.97

5 10 0.00014 0.0096 16.6 2.4 1 23 246 268 246 268 0.96

6 10 5.1e-06 0.00036 21.1 1.5 1 23 274 298 274 298 0.92

7 10 0.00052 0.036 14.8 1.0 2 23 304 326 303 326 0.95

8 10 0.02 1.4 9.8 1.5 2 23 372 393 371 393 0.95

9 10 0.0015 0.1 13.3 6.5 1 23 457 479 457 479 0.98

10 10 2.7e-05 0.0019 18.8 0.9 1 23 489 511 489 511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.6e-06	0.00011	22.7	3.1	1	23	134	156	134	156	0.98
2	10	5.6e-06	0.00039	21.0	6.1	1	23	162	184	162	184	0.97
3	10	0.00075	0.052	14.3	6.7	1	23	190	212	190	212	0.97
4	10	7.3e-05	0.0051	17.5	1.5	1	23	218	240	218	240	0.97
5	10	0.00014	0.0096	16.6	2.4	1	23	246	268	246	268	0.96
6	10	5.1e-06	0.00036	21.1	1.5	1	23	274	298	274	298	0.92
7	10	0.00052	0.036	14.8	1.0	2	23	304	326	303	326	0.95
8	10	0.02	1.4	9.8	1.5	2	23	372	393	371	393	0.95
9	10	0.0015	0.1	13.3	6.5	1	23	457	479	457	479	0.98
10	10	2.7e-05	0.0019	18.8	0.9	1	23	489	511	489	511	0.98

Sequence Information

Coding Sequence: ATGAATATAATGTGTGAAGCAATTGCAAGCCTGAATAAGGAAATACTGAAGAACAATTCAGATATTAAAGACAGTACACCTAACCTGGGATTGCTACCATTGTCAAAACCAGATCGGACCATATTAAGTGCAAGTTCAATATTTACTAAATCTGAACATGAGTATCACTTTCCTAATATACCACTTCCACCAcaaaaccacaattatttcaatGGATCAATCCCAGGAACTTTAGATAAAAGATATGATATAAATGGATCAACATCAACACAGGAAGTAAGCAATGGGTGCTATATTCTCAAGCAAGAAGGAGAAATCATAAATCCTAGTGATTTGCCTTTTCCTGTACCAAATCCAGACAGAACTGAGACGAATGAAGATTCTCAGAAATATAGACCTTTTGTTTGTAGAGAATGTGGCAAAGGTTATACACAAAAATGTCATTTGACTGCCCATATTCGAGTACATTCAGGAATCAAACCCCATACATGTTTTCAGTGTGGCAAATCATTCACACAAAAGCATAGTCTAAACACTCATATGCTACTGCATCAAAGTGATCGGCCGCACACTTGTACATTATGTAAGAAAAGTTTCACATTAAAGCACCACCTTGTTGCACATGAAAAGgTGCATAGTAGAGAGAAGCCTTTTGAGTGTAGTGAATGTGGTCAGGCATTTCCATTGAAACGTCATCTTGTCACCCATCAAAAGTTTCATGCAGGTGAAAGACCATATATTTGCAAAGAATGTGGGGAATCTTTTGCACTGGAAGAGCATTTGCAACACCATTCTCGGTTTCATGGATCTACCAATTCCTTCAGATGTAACAACTGTGGAGAGACGtttacaagaaaatttgaaCTAATGAACCACAGTCGCATGTATGGTCATGGTTATTTTCCTTTAATTTGTCAAATATGTGGAAAAGAGTTCTTGCAGAAGAAAACCCTAGTTGCCCACATGCACCGAATGCATGCAAACGTGTCCTTCAATTCGTCACAGTTCCAGACCAAATCGGGAGGACCACTACCACAACAACAAGCCCAACAGCAACAACCTCAGCAACACCAGCAGCCacagcaacaacaacagcaaccgACCACCGAATTGACATGTTCCCGTTGCCCCGTCAAATTTAATTCTCGCGAAGCCCTTCACATCCACGAAAAGTTTCACGACGGCGATACCTCGATCTTTAACGATTTGCTCGTTCTCTCCCAGCAACAAATGTCCCTGAACGCGCCCGGTTACGGTACCACCCCGAAACTACCCACAACAGTGACCGGTTCGGGACAGAACAATACCAACATGAACACTTTCGTCAACGGACTCCTGACCAACTATTCATTGGAAAAGCACAAGCCGTACGTGTGCAGCTTCTGTTCGAAAGCCTTCAGTACCAAACACGGTCTTTATCATCACAACAAAAGACATCCCGAGGGAACGTGTACCGAGAAACCGTTCAGTTGTCAAACGTGCGGCAAAGCTTTCAGACAGACGAATTATTTACTGTTGCACGAACGAGTTCACATGGATCGCAAGGCAATGGCAAACGCAAAgaaacaacaacagcaacaccagcaacaacagcagcagcagcagcaacaacaacaacagatGGGGAACAATGCATCTACGAGTACGTCGGTGGCTCCTTCGGCCACTGAAAATATTTCAACACAAACAGATAATAACGTAGATCAACGTGTGAGTTACGAGGGACCTCCCAATCATGGACCTGGAGCTCCTGAGTAA
Protein Sequence: MNIMCEAIASLNKEILKNNSDIKDSTPNLGLLPLSKPDRTILSASSIFTKSEHEYHFPNIPLPPQNHNYFNGSIPGTLDKRYDINGSTSTQEVSNGCYILKQEGEIINPSDLPFPVPNPDRTETNEDSQKYRPFVCRECGKGYTQKCHLTAHIRVHSGIKPHTCFQCGKSFTQKHSLNTHMLLHQSDRPHTCTLCKKSFTLKHHLVAHEKVHSREKPFECSECGQAFPLKRHLVTHQKFHAGERPYICKECGESFALEEHLQHHSRFHGSTNSFRCNNCGETFTRKFELMNHSRMYGHGYFPLICQICGKEFLQKKTLVAHMHRMHANVSFNSSQFQTKSGGPLPQQQAQQQQPQQHQQPQQQQQQPTTELTCSRCPVKFNSREALHIHEKFHDGDTSIFNDLLVLSQQQMSLNAPGYGTTPKLPTTVTGSGQNNTNMNTFVNGLLTNYSLEKHKPYVCSFCSKAFSTKHGLYHHNKRHPEGTCTEKPFSCQTCGKAFRQTNYLLLHERVHMDRKAMANAKKQQQQHQQQQQQQQQQQQQMGNNASTSTSVAPSATENISTQTDNNVDQRVSYEGPPNHGPGAPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00031308;
90% Identity: iTF_00032299; iTF_00031308;
80% Identity: -