Abig009794.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998121.1:22359499-22365931[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.2 2.2e+02 2.9 3.9 2 23 349 370 348 370 0.90 2 11 3.3e-07 2.3e-05 24.8 1.0 2 23 457 478 456 478 0.97 3 11 0.0011 0.08 13.7 0.1 1 23 484 506 484 506 0.95 4 11 0.00032 0.022 15.5 1.4 2 23 513 534 512 534 0.97 5 11 4e-05 0.0028 18.3 3.6 1 23 540 562 540 562 0.98 6 11 3.9e-05 0.0027 18.3 1.4 1 23 568 590 568 590 0.99 7 11 2e-06 0.00014 22.3 1.5 1 23 598 620 598 620 0.95 8 11 0.0004 0.028 15.1 0.2 1 23 626 648 626 648 0.95 9 11 7.4e-06 0.00051 20.6 1.0 1 23 654 676 654 676 0.98 10 11 0.00023 0.016 15.9 0.3 1 23 682 704 682 704 0.98 11 11 0.00051 0.036 14.8 2.8 1 23 710 732 710 732 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCCGATGACAGTACGAGATACGGGGATCTCTGTAGATTATGTGCCACCAAAACTAACGTGCTTTTGGGTGTGAATATTTTTGGAAACGAAGGTGCCGTCCGtcagattaataaaaaaattgaaacttgtCTTCCCATAcagattcATCAAACAGACGACTTACCAAAGATGATCTGTGAAACCTGCGTTTACAAATTAGAAATCTTTTATGATTTTCGTGAAAGATCAGTGAGAACAGAAAACTTATTAATAGAGTTATTCAAGGAACTTAGTGCAACAAAATCCCATAATACTTTAAACAAAGTGCCCCCATCTTTAGGCATTGGCAATCTAAATCATTCAGATATAATTTTGGTTCAAAACAATGATTTGCTAAGTCAACAAAGTTTGCAGGATATTGATTTCAGTCAGCTAGATCATAGACACATAATCATTACAGATAATGAAATTATGTTAAACCAACATAATGCAAATATAGCTGCAGCTCACTCCATGAGTGCTATGGATTTGAATCACCATGACTTAACAAGTCATGAACTTTCAAATCACAGTTTAAATGGTCAAGATTCAATGATAGTTAGTTCAGCAGATATGCATTTACTTCAGCATTCAAGATACATggaagaattaaatttaatacaatcagaacaacaatttattgcTGAGCAGTATATTTTGCATCAGGAGGCACAATTGACGACAGCAAGTAATTCTCATGAAATTACTGATGATGTTCAGTCTCATCCTCAGTCGCACACTAACATAGCTAGTACACAACAGGAcagtatttttgaaaattccaaaATGAATTTAAATCATGAGCTATCAAGTACGAGAGTAATGGCATCTACAGATGTACAGTTAACTTTAGATCAGAAAGATAGTACCCTTGTCAGCCACAAGAAAAACGATACAGTTGTTTCTGTTCCTGCTTCTGTTCCTTCACAATTAAAAGGAGATTTTGATACCAGTACCTCTACTTCACGTTCAGCTGAAGATTATAGCATTAATAAAATAGGAATTCCAGAAATATTGTTGACTTGTACTCTGTGTCAGGAACAATTTCATGAAAAAGGAGAATTTGCAAAACATTGTGATACACACATGAAAGAAACTAATTTTACAGCCAATGAATCAGCAAAATATCAAACGAAAGTAGATAAGGAAACAGTTAAGGCGACCGAAGAAGCCCCGAAGATTACCATTGCAAAAACAGAAGCAAAATTAAGCGATGCGGATGGTGACAGTGACGACGAGGATACTTTAAATAGAATACATCAGGATAATAATTTGGACGACGATAAACAAGGTGAAAAGTGTACACCCGAAAGTACAGCGAAACGTAAAAAATGGATACCGAAGGAGTGTAAAGAGTGCGGAAAAACCTATAAGACTAATTATAAACTAATAGAACATATGAGAATACATACGGGAGAAAAACCTTACCAATGTGGATCGTGTGAGAAAGCATTTAGATCCAAAATAGGTCTTGCACAACATGAAGCTAATCATACAGGTAAATACGAATTATCATGTCCCACGTGTGGGAAGGGCTTCCAGTGTAAAAGTTATCTTATGGTACATCAAAGGGTTCATTCTGATGTTAAACCATATCCATGTACAACCTGCGGGCGGCATTTTAAAACGAAACAATCTCTTTTGGATCATACAAATAGACATTTAGGACTTAAGCCTTACACGTGTGAAGAATGCGGAAAAGGTTTTATTACAAAAGGACTATGTAAAGCTCATTTAAAAACGCACTGGGGAATTGTAAATAGACAGTTTCTTTGTACTGTATGTAAAAAGATGTTTGTGTCCAAGAGCTACCTTCAAACCCATCTGCGGATACATACGGGAGAGAAACCGTTTGCATGTGAGTTTTGTGAGAAGGCGTTCGTGACACGGGTGGACTTGAGAATTCATTCGACTATGCACACGGGAGAAAAATCGTACGTTTGTGAAATTTGTGGAAAAGCATTCGCTCGCAGAGATGCCTTGAGGTGTCATAGACGGTCACATACAGGGGAGCGACCATACAGcTGTGAAGTATGTGGTCAAACATTTACACAATTTTCGCCGATGGCAATCCACAAGAGGCTTCACACAGGAGAAAGACCTTATCCTTGCGATGTATGCGGTAAATCATTCGTTTCTAGATCTACAATGATGTGTCATTACAAAAAGCACAACAAACAATGA
- Protein Sequence
- MAADDSTRYGDLCRLCATKTNVLLGVNIFGNEGAVRQINKKIETCLPIQIHQTDDLPKMICETCVYKLEIFYDFRERSVRTENLLIELFKELSATKSHNTLNKVPPSLGIGNLNHSDIILVQNNDLLSQQSLQDIDFSQLDHRHIIITDNEIMLNQHNANIAAAHSMSAMDLNHHDLTSHELSNHSLNGQDSMIVSSADMHLLQHSRYMEELNLIQSEQQFIAEQYILHQEAQLTTASNSHEITDDVQSHPQSHTNIASTQQDSIFENSKMNLNHELSSTRVMASTDVQLTLDQKDSTLVSHKKNDTVVSVPASVPSQLKGDFDTSTSTSRSAEDYSINKIGIPEILLTCTLCQEQFHEKGEFAKHCDTHMKETNFTANESAKYQTKVDKETVKATEEAPKITIAKTEAKLSDADGDSDDEDTLNRIHQDNNLDDDKQGEKCTPESTAKRKKWIPKECKECGKTYKTNYKLIEHMRIHTGEKPYQCGSCEKAFRSKIGLAQHEANHTGKYELSCPTCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGRHFKTKQSLLDHTNRHLGLKPYTCEECGKGFITKGLCKAHLKTHWGIVNRQFLCTVCKKMFVSKSYLQTHLRIHTGEKPFACEFCEKAFVTRVDLRIHSTMHTGEKSYVCEICGKAFARRDALRCHRRSHTGERPYSCEVCGQTFTQFSPMAIHKRLHTGERPYPCDVCGKSFVSRSTMMCHYKKHNKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032281;
- 90% Identity
- -
- 80% Identity
- -