Abig013734.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28914438-28915625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.94 66 4.5 2.1 1 23 85 108 85 108 0.93 2 11 1.7 1.2e+02 3.7 3.5 3 23 116 137 115 137 0.90 3 11 1.7e-06 0.00012 22.6 3.2 1 23 142 164 142 164 0.99 4 11 2.6e-06 0.00018 22.0 0.9 1 23 169 191 169 191 0.98 5 11 0.00048 0.033 14.9 0.6 2 23 197 218 196 218 0.92 6 11 0.00095 0.066 14.0 1.1 2 23 225 246 224 246 0.94 7 11 0.00055 0.038 14.7 2.5 1 23 255 277 255 277 0.99 8 11 2.9e-05 0.002 18.7 0.1 2 23 283 304 282 304 0.97 9 11 3.9e-05 0.0027 18.3 0.1 1 23 310 332 310 332 0.97 10 11 2.3e-06 0.00016 22.2 2.1 1 23 338 361 338 361 0.95 11 11 9.3e-06 0.00065 20.3 2.7 1 21 367 387 367 389 0.95
Sequence Information
- Coding Sequence
- ATGTACAAGCATACTCTTCATCTCATAAATCTCAAAATTGTGGGTGCTTTTCTTTTCCCAGCTGTATTCCTATTGTATTTTGAACTATTTCATAATCAAGTTGTTTTTGGTATTTATGTAAAACAGCTTTTTTGGGTGCAAAATACTCGGAGTACGTTGAAGACGTTTTCTGTTTTTTACAGAGTTTCCGTCACGAAACTTGAGAAAGAAGACAACATCTCCGATAACGAAGACAACAATCATACAGATAGTTTCAAATGTAACCAATGTACGTTCAAGTGTGACGAAAAGGCGGCGATcgtttatcatttaaaaaatattcacgACAAAACTGCCGTTGCGTTCTGTACGTTTTGCAACTTGGTTTTCGATAATATGAAACTCCGAAAAAAACACTATTATCACGAGCACGTGCCCAAAAAGTATCCTTGTACAATTTGTACGTTGTCGTGCAAATCGAAATCGTTATTGACGCGTCATTTGCGAACTCACGAACAGCAACAATTTAAATGCGAGGTGTGCAATAAGATTTTTCGGTCCGACACTGGTCTTAAGCGGCATATGGATTCTCACGAAGGAAATCTCGTACCTTGTTCCGAGTGCggcaaaatgtttcacaaaagctACTTGTCCGTTCATTTCAGCATAGTACACGGCGAACGTGAGGAAATCGTGTGCGTAAAGTGCGACAAAACTTTCAAGAGTCAACTAACATACAAGTTGCACAAATACGTGCACGAGCCCGATTTCAAACCAAACGGTTACGAATGTACCGATTGCGACGGTAAATTCAATTCGATGTACAGGTTGAAGCAACATAGAAAGCGCCACACTAGGGATAATATGGTGTGCGAACTTTGCGGCAAGGCGTTAATGACTAACTACGGTTTACGGATACATATGCGCGTGCATCGTGGCGAGAAACCGTTTGTTTGCGACATTTGCGGCAGTTCTTTCGCCTTGCAAAGTACTTTGAAAGTACACAAACTGGTACACACGAAAGAAAAACCTCACGTTTGTCACGTGTGCGGCAAGCGCTTCTCGCAAAGGACCTCGCTCGTGTCGCACGTACGTGGCATTCACACGAAAGAAAAACCTTATGAATGCTCTATTTGTGGAAAATCGTTTGTGAACAGAAGTACCATGAATACCCACTTGAAATGTCACGGAAAAAGGGTGGTCACATAA
- Protein Sequence
- MYKHTLHLINLKIVGAFLFPAVFLLYFELFHNQVVFGIYVKQLFWVQNTRSTLKTFSVFYRVSVTKLEKEDNISDNEDNNHTDSFKCNQCTFKCDEKAAIVYHLKNIHDKTAVAFCTFCNLVFDNMKLRKKHYYHEHVPKKYPCTICTLSCKSKSLLTRHLRTHEQQQFKCEVCNKIFRSDTGLKRHMDSHEGNLVPCSECGKMFHKSYLSVHFSIVHGEREEIVCVKCDKTFKSQLTYKLHKYVHEPDFKPNGYECTDCDGKFNSMYRLKQHRKRHTRDNMVCELCGKALMTNYGLRIHMRVHRGEKPFVCDICGSSFALQSTLKVHKLVHTKEKPHVCHVCGKRFSQRTSLVSHVRGIHTKEKPYECSICGKSFVNRSTMNTHLKCHGKRVVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -