Abig013711.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus biguttatus
Gene Symbol
-
Assembly
GCA_963921985.1
Location
OY998123.1:28808636-28819016[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.039 2.7 8.9 0.2 2 23 92 113 92 113 0.96
2 19 0.047 3.3 8.6 0.6 1 23 117 139 117 139 0.98
3 19 0.00031 0.022 15.5 2.9 1 23 173 195 173 195 0.98
4 19 1.1e-05 0.00078 20.0 0.4 1 23 241 263 241 263 0.98
5 19 0.11 7.4 7.5 8.0 1 23 269 291 269 291 0.95
6 19 0.00018 0.013 16.2 0.3 1 23 297 319 297 319 0.98
7 19 0.00042 0.029 15.1 3.0 1 23 325 347 325 347 0.99
8 19 1.5e-06 0.00011 22.7 2.6 1 23 353 375 353 375 0.98
9 19 0.0031 0.22 12.3 3.2 1 23 381 403 381 403 0.99
10 19 7.5e-05 0.0052 17.4 4.0 1 23 409 431 409 431 0.98
11 19 0.46 32 5.5 1.3 2 21 468 487 468 489 0.94
12 19 0.011 0.8 10.5 0.2 2 23 567 588 567 588 0.97
13 19 0.002 0.14 12.9 0.2 1 23 592 614 592 614 0.99
14 19 2.1 1.5e+02 3.4 1.0 1 20 620 639 620 642 0.91
15 19 0.0022 0.16 12.8 0.9 1 23 648 671 648 671 0.97
16 19 0.00017 0.012 16.3 0.6 2 23 678 700 677 700 0.94
17 19 0.00069 0.048 14.4 2.5 2 23 702 723 701 723 0.95
18 19 2e-05 0.0014 19.2 0.1 1 23 726 748 726 748 0.98
19 19 0.00087 0.061 14.1 6.8 1 23 754 776 754 776 0.99

Sequence Information

Coding Sequence
ATGTTTGTTGATGATCGCCTATGGAAAAATTCAGGACCCGAAGGAATACAAACAGACGAAAAATGTAACACTgaagaagaacataaaaatttcataaaaccaatcgaaaaaaaaatttatcACTGCCATCACCATGGTACATGTACTGACCTTTTCACTCAACACGAACTTTTCAATCATTGCAAGCTTCACGATATCAAAATAGACAATTCAACGGTCTATTTTAAGaaagtttttcttagaaaagtAAAGACTAAAGGTAAAATTGAAGAATCCTGTGAAATATgctttgaattattttcttctaaacAAGTTCTCAATGTTCATTACGAGATTCACGAAAATGTTTACAAATGTATCGATTGCAATGCAGGATTTAAAAGAATTATGGAATACGTCACTCATACAAAAACTCACAGGAAAGATAACATGTACCAATGTCCTTCATGCGATGTAAAATCAGAAGAAAGGCAGAAGATGTCTAGACATCTTCACTGTCACGAATTTTATAGGCGATACAAGTGCCAAATATGTGAAAAACGTTTTTCAACTTACCACCCTtataatgaacatgtaaaaattcATGACAAGGGTGAACCTCCGGTATGCGGCGAACCTTCACTAAATCTGACCGATCGCATATTTAATGAAGGTGGTAATCAATTTTCTTGTTATAAAATAACGGAGAAATCCACAATGTCACATCCTCCTATAAAACGTTACGTATGTGACATGTGCGGAAAGGTGTTTACAAACAAAAGACCCTTTGGCGTTCACATTAAAAGACATAAGGATGAAAAGCCGTTTAAATGCTCATTCTGTGACAAGAAATTCATTACAAACAGTTGTAAAAAAAGCCATGAATGCGCTCACACTGGGGATAAACCTTACAAATGTCCTGAATGTGGTAAGGGTTTTATGGGACGAACCAGTATGATTATACACTTCCGACTGCACACGGGCGAACGTCCATTTAAGTGCTCATTTTGTGACAAGAAATTTATTTCAAGTGGTTATAAGAAAGAACATGAGCGCACTCATACTGGGTACGAACCCTATAAGTGTCCTCATTGTAACAAAGGTTTCAGGCAGCGAGCTAGTTTGGTTAGACATTCCCGGCTTCACACTGGCGAACGTCCATTTAAGTGCTCATTCTGTGACAGAAAATTTAGTgcaaataaagacaaaaaagaCCACGAACGCACGCATACCGGAGATAAGCCTTACAAATGTGCTCACTGTAATAAAGGTTTCACTCAGAGGACCACGATGGTTAGACACACGCGACTGCACACGGGCGAACGTCCACGCTCCATTTGGACCGATGATGATACAGATGTTAAAGAACCTATACTGATCAAAGTTGAATTTAATGATCCTGAAAAGAATAAAAAGGAAGCACAATGTGAAATATGTTTGGATATGTTCGTAAACCAAGAAACGTTACAAGAACATTATAAGTGTCATGTTCTcGGACCCGAAGAATTACAAACAGATGATGAAAAACATAAGGATCTTATAAAGCCaaccgaaaaaaaaatgtattactgCCATCATCATAAAATGTGTAGTAAACTTTTCACTAAAAACGAACTTCTCAATCATTGCAAGCTCCACGATATCAGAATAGAGAATCCAACAGCGTATTTTAAGAAAGCACTTCATAAAAAAGTAACGCGAAGGGCCAAAATTGAAGAATCCTGCGAGATTTGTTTCAAACTATTCCCTACTAAGCTAGCTCTCAGCATTCATTACGAAACTCACGAAAATGTTTACAAATGTGTCGATTGCAATGCAggatttaaacaaattattgaaTACGTCGCTCATACAAAAACTCACAGGAATGATAACATGTATCAGTGTCCTTCATGCGATGTAAAATCAGACGACAGAAGAAGAATGACAAGTCATCTTCACTGCCACGAATCTTATAAACGATACAAGTGCCAAATATGTAACCAACGTTTTCCAACTTATCAGCCTTATAATGAACACGTAAAAATTTATCACGAGGGTGAACCTCCGCTGTCGTGCGAAATATGCggtgaaaatttcaaatcttcGCGAACTCTGATCTCTCACAAAATTAAGAGACATTGCGAATGTCGTTTATGTGGTAAAAAATTTTCGTCTTATGAATTAATGCAATGGCACAGGTTGTCACATAATCCCTATGTCTGCGACATTTGCGGAGAAGTATATACTAGCAAGGCGTCCTTTGGAGTTCATATTAAAAGTCATAAGGACGAGAAGCTCTTTAAATGCTCACTCTGCAACaagaaatttatttcaaatagttGTAGGAAAAAACACGAACGCACCCACTCTAGTGATAAACCGTAG
Protein Sequence
MFVDDRLWKNSGPEGIQTDEKCNTEEEHKNFIKPIEKKIYHCHHHGTCTDLFTQHELFNHCKLHDIKIDNSTVYFKKVFLRKVKTKGKIEESCEICFELFSSKQVLNVHYEIHENVYKCIDCNAGFKRIMEYVTHTKTHRKDNMYQCPSCDVKSEERQKMSRHLHCHEFYRRYKCQICEKRFSTYHPYNEHVKIHDKGEPPVCGEPSLNLTDRIFNEGGNQFSCYKITEKSTMSHPPIKRYVCDMCGKVFTNKRPFGVHIKRHKDEKPFKCSFCDKKFITNSCKKSHECAHTGDKPYKCPECGKGFMGRTSMIIHFRLHTGERPFKCSFCDKKFISSGYKKEHERTHTGYEPYKCPHCNKGFRQRASLVRHSRLHTGERPFKCSFCDRKFSANKDKKDHERTHTGDKPYKCAHCNKGFTQRTTMVRHTRLHTGERPRSIWTDDDTDVKEPILIKVEFNDPEKNKKEAQCEICLDMFVNQETLQEHYKCHVLGPEELQTDDEKHKDLIKPTEKKMYYCHHHKMCSKLFTKNELLNHCKLHDIRIENPTAYFKKALHKKVTRRAKIEESCEICFKLFPTKLALSIHYETHENVYKCVDCNAGFKQIIEYVAHTKTHRNDNMYQCPSCDVKSDDRRRMTSHLHCHESYKRYKCQICNQRFPTYQPYNEHVKIYHEGEPPLSCEICGENFKSSRTLISHKIKRHCECRLCGKKFSSYELMQWHRLSHNPYVCDICGEVYTSKASFGVHIKSHKDEKLFKCSLCNKKFISNSCRKKHERTHSSDKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-