Abig013703.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28771161-28772234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00047 0.033 14.9 3.8 2 23 25 46 24 46 0.96 2 11 0.0002 0.014 16.1 0.2 1 23 67 89 67 89 0.96 3 11 0.00022 0.015 16.0 0.6 1 23 93 115 93 115 0.98 4 11 0.15 11 7.0 1.5 1 23 121 145 121 145 0.96 5 11 0.00014 0.0099 16.6 2.8 1 23 151 173 151 173 0.98 6 11 0.017 1.2 10.0 0.5 1 23 179 202 179 202 0.93 7 11 0.00047 0.033 14.9 4.7 2 23 214 235 213 235 0.98 8 11 4.4e-07 3.1e-05 24.4 1.6 3 23 249 269 247 269 0.96 9 11 1.3e-05 0.00088 19.9 0.5 1 23 275 297 275 297 0.98 10 11 5.8e-07 4e-05 24.1 1.0 1 23 303 325 303 325 0.99 11 11 3e-05 0.0021 18.7 0.1 1 22 331 352 331 352 0.96
Sequence Information
- Coding Sequence
- ATGGATGACGACATGGAGTGCAATGATCATCTCGTACGTACAACAAATCAGGCCAGAACAAAACGTATTTGGTCATGTAAAAAATGCAAAGAGGTCTTCGAGACATGCCGGCTGCTTCGGACACATAGAAAAATTCACAGGAAAGAAAAAATCGACGATACCCAATACAACTATTACTTCGATAAGAATAGGAATATTTACACTTGTAGCACATGCGACGCCGAGTTTTCGTCCAAAGAAGAAGTAGAAAAACACGTAGTCAGTCACAAGGAGTGTTACACGTGTGTGACATGTAACTTGAGCTTCGATGAACCGTACAACTATGCGATTCATATGCATATTCACAGTGAAGATCGCATGTTTCGATGTCCCTTGTGCAACTCGTACAAAACGTCGAAGAGAACGGTCTTAATGACTCACATAAACACCTACCATCTCCGTAGGTTCATCTACAAATGTAAAACCTGCGGTAAAGGTTTCAACGATTGCGTCTTGTTCAAGGAACACAGCAACATTCACGCAGGAGTGAAACCGTTTCGTTGCATCGTTTGCGGCAAAGATTTCCCATTTTCCATCTATCTTTACACGCACCAGGTCAGAAACCACAAGGTCTCCATAGAAGGGGTCATAGCGACCAATCAATGTTGCGTATGTCGAAGACGATACGCCAACTCTAGGACCCTAGAGAAACATATGAAGAAGCACGAGACCGTAGTGAAAAAAAGTCCTGAAAAGAAACATCTGTGTGACATTTGCGGGAAGGGTTTTGCTAGAAAAGACAAACTCAAGATCCACTATCGAACTCACACGGGAATTAAACCCTATGCTTGCTCCTATTGTCCGAAAAGGTTTATTAAACGGGATTATTTAGTCATGCACGAAAGGGTTCACAGCGGTGAAAAACCATACTCTTGCGAATACTGTGGAAAGTGTTTCAATCAAGGAGCACCCCTCAGGGTACATATACGAACACACACCGGGGAAAAACCATATGTTTGTCATATTTGTTCAGCTGCTTTCACATCGAATGGAGCGTTAAAATTGCACTTAAGAAGCTGTCCaggaatgaaataa
- Protein Sequence
- MDDDMECNDHLVRTTNQARTKRIWSCKKCKEVFETCRLLRTHRKIHRKEKIDDTQYNYYFDKNRNIYTCSTCDAEFSSKEEVEKHVVSHKECYTCVTCNLSFDEPYNYAIHMHIHSEDRMFRCPLCNSYKTSKRTVLMTHINTYHLRRFIYKCKTCGKGFNDCVLFKEHSNIHAGVKPFRCIVCGKDFPFSIYLYTHQVRNHKVSIEGVIATNQCCVCRRRYANSRTLEKHMKKHETVVKKSPEKKHLCDICGKGFARKDKLKIHYRTHTGIKPYACSYCPKRFIKRDYLVMHERVHSGEKPYSCEYCGKCFNQGAPLRVHIRTHTGEKPYVCHICSAAFTSNGALKLHLRSCPGMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032279;
- 90% Identity
- iTF_00032279; iTF_00031296;
- 80% Identity
- -