Abig013730.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28894294-28895469[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6e-05 0.0011 19.6 2.8 1 23 103 125 103 125 0.98 2 10 0.00036 0.026 15.3 4.9 1 21 131 151 131 153 0.94 3 10 1.1e-06 7.5e-05 23.2 5.8 1 23 158 180 158 180 0.99 4 10 0.0017 0.12 13.1 1.4 2 23 187 209 186 209 0.93 5 10 0.00019 0.014 16.1 0.3 1 23 214 236 214 236 0.97 6 10 0.00034 0.024 15.3 1.4 2 23 247 268 246 268 0.96 7 10 0.00017 0.012 16.3 0.1 1 23 274 296 274 296 0.98 8 10 0.00013 0.0091 16.7 1.0 2 23 303 324 302 324 0.97 9 10 4.8e-09 3.4e-07 30.6 3.0 1 23 330 352 330 352 0.99 10 10 0.00045 0.031 15.0 1.0 6 22 362 378 359 378 0.94
Sequence Information
- Coding Sequence
- ATGATGAATCGCAATGTTGGGAACATCGGTTTGAGCGATGTAGCCTACTTGGACGGTGCAGTGGACGACACCGATAACGAACTATTTAATTTACTGGTAGTCGAAGATGAATGTTCTGCACTGTTACAAAACATAAACAGCGAACAATTCGACAATTTTATTATCGGAAACAATACATACGGAACGGGACCAACTCTAGAAACGCTAGTTAGTGATAAATTGTATCAACAGAAAAGGCACGTTCAAAACGAAAGTGATCTCATATCTTCTCAAGCAAATAGCAAGGGAAGAAATAGCACGAGAAAATTCAAATGCGATCGCTGCGGTAAAAGTTTTACAACGAAAAAATTAATTCGATATCATCTTATGAATCACTTTGAGTTACGGCCTTTTTCGTGCGATGTTTGTGGAAAAACGTTCAGGCACAGATACGAAGTGACAATTCACAAACGATGTCACAATAAGCCGACATTTCAGTGCGACATTTGTTCGAAAATGTTCATCCACAAATCTCATTTGAACGTTCATCGGCGGAAACACACGCGTGATTACGTTTCGTACTGTAACATCTGTAATAAAGGTTTTATATCGGAAACAGCATACAAACATCACAAAGACATTTTTCATGACGGTTTATTGCACGTGTGCGAAGTGTGCGGTGCACGATTACGATCTATATCGTCATTGAAAGAACACATTTCGACACACGAGCCAAACTATCACCAAAACAGACGTTTGGTTTGTCACGTGTGCGGCAAAACGTTTCTGACCGATCGTAATCTTCGCGGCCACCTTAAATCGCACAATCAGCCGAAAAAGTATGTCTGTACCATTTGTGGTAAGGCGCTTAGCGGTAAGAAAGTATTCGAAGATCATATAAAAATGCACGGCGGGGACAAAAGCCAAGTGTGTCCGATTTGTGGAAAAGGGTTCACGTGCACTAACTACTTAACTGTCCATTTGAGAAGTCACACCGGCGAAAAACCGTACCAGTGCAAAGAATGCAAGAAAAGTTTTACTCAGAGATCGAGTCTTACGGTGCACATGCGGTCACATACAGGCCAGCGCCCATATCGTTGCCGCTGCGGAAAAGCATTTATCACCAAGAGTCACTTAGTAAATCACTACAGATCTCGTTCTAACTGTAACGCCGGTGATTTCAGCGAAGTTGATTGA
- Protein Sequence
- MMNRNVGNIGLSDVAYLDGAVDDTDNELFNLLVVEDECSALLQNINSEQFDNFIIGNNTYGTGPTLETLVSDKLYQQKRHVQNESDLISSQANSKGRNSTRKFKCDRCGKSFTTKKLIRYHLMNHFELRPFSCDVCGKTFRHRYEVTIHKRCHNKPTFQCDICSKMFIHKSHLNVHRRKHTRDYVSYCNICNKGFISETAYKHHKDIFHDGLLHVCEVCGARLRSISSLKEHISTHEPNYHQNRRLVCHVCGKTFLTDRNLRGHLKSHNQPKKYVCTICGKALSGKKVFEDHIKMHGGDKSQVCPICGKGFTCTNYLTVHLRSHTGEKPYQCKECKKSFTQRSSLTVHMRSHTGQRPYRCRCGKAFITKSHLVNHYRSRSNCNAGDFSEVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -