Abig015984.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998125.1:7707156-7708760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0077 0.54 11.1 7.5 1 23 78 100 78 100 0.97 2 14 6.4e-05 0.0044 17.6 0.4 3 23 110 131 109 131 0.95 3 14 0.38 27 5.7 0.2 2 23 151 172 150 172 0.93 4 14 0.0076 0.53 11.1 3.2 2 23 176 198 176 198 0.96 5 14 2.4e-05 0.0017 19.0 2.1 2 23 209 230 209 230 0.98 6 14 4.2e-05 0.0029 18.2 2.7 3 23 237 257 235 257 0.96 7 14 9.4e-05 0.0066 17.1 6.2 1 23 263 285 263 285 0.98 8 14 3.4e-06 0.00024 21.7 1.4 1 23 291 313 291 313 0.99 9 14 0.0033 0.23 12.2 0.3 1 23 319 341 319 341 0.97 10 14 1e-05 0.00071 20.1 4.0 1 23 347 369 347 369 0.98 11 14 5.4e-06 0.00038 21.0 0.9 1 23 375 397 375 397 0.97 12 14 0.12 8.1 7.4 2.4 1 23 414 436 414 436 0.97 13 14 1.9e-06 0.00013 22.4 0.1 1 23 442 464 442 464 0.98 14 14 1.9e-05 0.0013 19.3 2.6 1 23 470 493 470 493 0.98
Sequence Information
- Coding Sequence
- ATGACGGATTTTCAAAACGAGTTTATTAATGcagttattaaaaaagaagaaccAGAATATGCAGACGACGAACCAGAATTTTATGGATTTGCAAATGAAAAAAGCCATGATGAGGTTATAGTTTTAAAAGTCGACAATAGGGAAGATTTCGAAAAAGAAGACGTTGTATTCTTAAAAGTTGAAGATGTCGACGACGAAGAAGTCGAAATTGAATATGATTTGGCCATTTTATTCAAATGTGACATTTGTAATAGATGCTTTACTGATAAACACGAATGTGAGATGCATGTTAATAGTCATGATGATGATACTAAGGAATCACTGCTGTGTACAGATTGTGGGATGTTATTTATCCGCCAGAAAGATTTAAATAAGCATATGCTAGACTATCATCCTGACAAATTCGAAGAGCCAATAAAGGAGTCTCAAAAGAAGCAAGAAACAATTTTAGAATGTGGTCTCTGTGCAGAGTATTTTTATTCAGAGGAGGACTTGTTAACTCATTTCAATTTTCACGCCACTAATGAGTGTAGGATGTGCTCTGAGAAGTTCATAACTACCAAAGAATTAAAACAGCACCTTTGTAAAGTTCATGGAAAAGTTCCAAAGGCAAATGGTAGTGCTAAATGTAAACTTTGTGACAAGGTTTTTGTAAATGAACGGTCGTTCAAATCTCATTTAAGAAATCATGCCACAAATCCTCATCTGTGTACTCTCTGCGGTAAGAGTATTAAAACTAGTACAGATTTTAAAAGACACATGAATATTCATGAAGGAAATAAGCCATTTAAATGTAGCTACTGCAACTATAGATGCTCCAAGAAGTCAAATTTGGTTACCCACACTAGATTACACACTGGAGAGACCCCTTATCAGTGTGAGAAATGTGGGGAACGTTTTACATACAAGACAGCTTTTAATAATCATGTTCTCACTCATAATTCTGAGAAGATGTTTTATTGTGCTTATTGTGACAAGAAATTTGTTGCATATTCTATTCTGATTGCCCATGAACGTTCTCATACTGGAGAAAGACCCTACAGTTGTGGCACATGCCACAGAAGTTTTTCTGCGAGGTCCACGctcaaaaaacacatgaaacTGCATTCAAAAgattactgttttatttgcCACGTTTGTGGAAGGGCATTTAAGTCGAAGGCGTCGTTAGACACCCATTTGCAATTGCATGCTGGCAAAAATCAATTTATTGAGATAATGATTAATTCTACAAAAATGTTCAGATGTATTCATTGCGATAAATTATCGAGAACCAGTAACAACGCTTTGAGACACCTTAAAATACATACGGGGGAGAAGCCCTTCGTTTGTGTCATTTGTGGGAGAAGTTTTAGCGAAAAGGCGTCCCTTAAAGGTCACCTTCGGATCCATACAGATGAAAGACCTTTTACATGCGAGTTTTGTAACAGTTCTTTTAGAGACAGGTCAGTGTTACGACGTCACATTAGAAGGAGACATTCTGTGGCTAACGAAGTCGAAATAGAGCTAGAATTCGCCATGGCCGACGAAGAACATGTCGATAGTCCAAAAGAAACGACAATTATTATTGACGATGATTATAAAATGGAAACCGAAGATTCGTAG
- Protein Sequence
- MTDFQNEFINAVIKKEEPEYADDEPEFYGFANEKSHDEVIVLKVDNREDFEKEDVVFLKVEDVDDEEVEIEYDLAILFKCDICNRCFTDKHECEMHVNSHDDDTKESLLCTDCGMLFIRQKDLNKHMLDYHPDKFEEPIKESQKKQETILECGLCAEYFYSEEDLLTHFNFHATNECRMCSEKFITTKELKQHLCKVHGKVPKANGSAKCKLCDKVFVNERSFKSHLRNHATNPHLCTLCGKSIKTSTDFKRHMNIHEGNKPFKCSYCNYRCSKKSNLVTHTRLHTGETPYQCEKCGERFTYKTAFNNHVLTHNSEKMFYCAYCDKKFVAYSILIAHERSHTGERPYSCGTCHRSFSARSTLKKHMKLHSKDYCFICHVCGRAFKSKASLDTHLQLHAGKNQFIEIMINSTKMFRCIHCDKLSRTSNNALRHLKIHTGEKPFVCVICGRSFSEKASLKGHLRIHTDERPFTCEFCNSSFRDRSVLRRHIRRRHSVANEVEIELEFAMADEEHVDSPKETTIIIDDDYKMETEDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032257;
- 90% Identity
- -
- 80% Identity
- -