Abig009907.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus biguttatus
Gene Symbol
-
Assembly
GCA_963921985.1
Location
OY998121.1:25030069-25038964[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00085 0.059 14.1 7.6 1 23 349 371 349 371 0.99
2 14 1.1e-07 7.4e-06 26.4 2.5 1 23 377 399 377 399 0.99
3 14 9.2e-05 0.0064 17.1 0.8 1 23 405 427 405 427 0.96
4 14 0.00087 0.061 14.1 3.1 1 23 433 455 433 455 0.98
5 14 0.00016 0.011 16.4 3.8 1 23 461 483 461 483 0.98
6 14 6.8e-06 0.00047 20.7 1.2 1 23 489 511 489 511 0.98
7 14 3.8e-07 2.6e-05 24.7 3.4 1 23 643 665 643 665 0.98
8 14 2e-05 0.0014 19.2 2.3 1 23 671 693 671 693 0.98
9 14 0.00019 0.013 16.2 2.8 1 23 699 721 699 721 0.98
10 14 8.1e-06 0.00057 20.5 1.4 1 23 727 749 727 749 0.98
11 14 0.00012 0.0081 16.8 2.1 1 23 755 777 755 777 0.98
12 14 8.5e-05 0.0059 17.2 5.5 1 23 783 805 783 805 0.98
13 14 0.00019 0.013 16.2 0.9 1 23 811 833 811 833 0.98
14 14 0.022 1.6 9.6 1.8 5 23 843 861 842 861 0.96

Sequence Information

Coding Sequence
ATGCCACATAAGTGTTGCATCCGGAACTGCAGAATTGAACTATATGATCCggaatgtataaatataagttttcATAAGGTACCTTCTGATGAGAGCTGCAGAAAAAAATGGCAAGAATCTGTAAATCATCTCATTAGTGGTGAGTTGAAGAAAAACTGGTTCATTTGCAGTTTGCACTTTGAAAAAGACTGCTATGTTGACACTCCTTTGGGTATCTATCGAAGGCTGAGGAAAGGATCTTATCCTACCATTTTTCTCCCATCCAAAAAATATCTAAAGCGATGTAAACAAAAACCTACTGATGCTACAACAATGAAAAGTGACTTATTACAAGATAATTGCAATATGTTGCATTTTACTGATAAAGAAGATAATAAAACaagtgaaaaattaaatttagacggaatGAGAGAAAACATCATTACAAAAAAGGATGTAGATGATAATATTATTCAAGGAATCGAGTTAATTGACAAAACATGTTGTTTTTATGAAAAGGAAGATGATAGAAAAAATGGGTCTTTCAATTTAGATATAAAGgaagaaattattataaaagaagaAGTAGAAGATAATATTTCTAAAGTTGATACTGAGTTTATTGATGAAACTTGGCATTATAATGATAAGGAAGATAAGAAAACAAATGAgcttttaaatttagatattaTAAAAGTAGAAACTATTGTAAAAGAAGAAACTGAAGGTGATATTTTTGAAGGTGACACTAAGTTTATTGGAGGAACGTTGCATTATTCTAATAAGgaagaaagtaaaaaaaatgagcttttaaatttagatattataaaagtagaaactattataaaaaaagaagcAGAAGGTAATATTTGTGAAGGTGATACTGAGTTTAGTGATGGAACTTGGTGTTGCCCTGATAATGATGATAATAGAAAGAAtgctcatttaaatttaaaccatACTAAAGAAGAAACCATTATAGAAAACAATATAGAAGTTTCTCATAAAACTGTTACCAATAAATCGTACTTGATTGACTTGATGACACAATTGGAAGAAAAACCGTTCAAATGCAAAACTTGTGAAAAATGTTTTGTCTCAAAATCAAAGTTGACCTGCCACATTCGCATACATACTGGGGAAAAACCGTACAAGTGTGAAGTGTGTCAGAAAAGGTTTGCCAATAAGCAAAATTTCAATAGACATATGCGTATTCATACAGGAGAACAGCCATTTAAATGTGAAACCTGTGGACGGAGCTTTAATGAGAAAGTTAGCTTGATGTATCATCAAGTGTTACATACGGGTGAACGTCCATTTGAATGTCGGATTTGCAGTAAACGCTTTGTCACAAAATCGAAGCTGGCCTGCCACATTCGCCTCCATACCGGGGAAACGCTGTTTGAGTGTAAAGTGTGTCTGAAAAGGTTTTCCTATAAACGAGATTTCGATCGACATACCCGTACTCATACAGGAGAAAAGCCATTCAAGTGTGAAACCTGTGAACGGAGATTTACTCGAATaGGTGATTTGATGCGTCATCAAATGTCGCATACAGGCGAACGTCCGTTTGAATGTCCGAATTGCGaaataaaagaagaaagtattataaaaaaagaagtagAAGGTAATATTTTTGAAGATGACACTGAGATTATTGTTGGAACGTTGCATTATCCTGATAAGGAAAATAATGAAAGAAAGGAccttttaaatttagatatcATAAAAGTAGAAACTATTATAAAAGAAGAAGCAGAAGGTAATATTTTTGAAGGTGACACTGAGTTTATTGTCAAAACATGGCATTATCCTGATAAGGAAGATAATAGAAAAAAtgatcatttaaatttaaatcatacTAAAGATGAAACCATTATAGAAGATGATATAGAAGGTAGagCTAGCTTAACGCATCATCAGATGTTGCATACGGGCGAACGTCCATTTGAATGTCCGATTTGCAGCAAACGTTTCTCCAAAAAATCTCATTTTAATAGTCATATTCGAATTCATACTGGGGAAAAACCGTACGAGTGTCAAGTGTGTCAGAAAAAGTTTGccaataaacaaaatttcgaTCGACATAAGCGCATTCATACTGGTGAAAAGCCATTCAAGTGTGAAACCTGTGAACGGAGATTTAATGAGAAaGCTAGCTTGATGCATCATCAGATGTTGCATACGGGCGAACGTCCATTTGAATGTCGGATTTGCAGCAAACGTTTCGTTACAAAATCCAAGCTAGCCTACCACATTCGCCTCCATACCGGGGAAAAAGTGTACGATTGTAAAGTGTGTCTGAAAAGGTTTTCCGATAAACGAGATTTCGATCGACATACGCGCATTCATACGAGAGAAAAGCCATTCAAGTGCGAAACCTGTGGACGGAGATTTAATCACaaaGCTAGCTTCATTCATCATCAGATGTTGCATACAGGCGAACGTCCATTCGAATGTCCAATTTGCAGCAAAGGTTTCGTCACAAAATCGAAGCTAGGGTGTCATATTCGCATCCATGCCAAGGAAAAACCGTACGAGAGTCAAGTGTGTCAGAAAAAGTTTTCCCAAAAACATACCCGCGATGTACATATGCGTGTTCATACGAGTGAATAG
Protein Sequence
MPHKCCIRNCRIELYDPECINISFHKVPSDESCRKKWQESVNHLISGELKKNWFICSLHFEKDCYVDTPLGIYRRLRKGSYPTIFLPSKKYLKRCKQKPTDATTMKSDLLQDNCNMLHFTDKEDNKTSEKLNLDGMRENIITKKDVDDNIIQGIELIDKTCCFYEKEDDRKNGSFNLDIKEEIIIKEEVEDNISKVDTEFIDETWHYNDKEDKKTNELLNLDIIKVETIVKEETEGDIFEGDTKFIGGTLHYSNKEESKKNELLNLDIIKVETIIKKEAEGNICEGDTEFSDGTWCCPDNDDNRKNAHLNLNHTKEETIIENNIEVSHKTVTNKSYLIDLMTQLEEKPFKCKTCEKCFVSKSKLTCHIRIHTGEKPYKCEVCQKRFANKQNFNRHMRIHTGEQPFKCETCGRSFNEKVSLMYHQVLHTGERPFECRICSKRFVTKSKLACHIRLHTGETLFECKVCLKRFSYKRDFDRHTRTHTGEKPFKCETCERRFTRIGDLMRHQMSHTGERPFECPNCEIKEESIIKKEVEGNIFEDDTEIIVGTLHYPDKENNERKDLLNLDIIKVETIIKEEAEGNIFEGDTEFIVKTWHYPDKEDNRKNDHLNLNHTKDETIIEDDIEGRASLTHHQMLHTGERPFECPICSKRFSKKSHFNSHIRIHTGEKPYECQVCQKKFANKQNFDRHKRIHTGEKPFKCETCERRFNEKASLMHHQMLHTGERPFECRICSKRFVTKSKLAYHIRLHTGEKVYDCKVCLKRFSDKRDFDRHTRIHTREKPFKCETCGRRFNHKASFIHHQMLHTGERPFECPICSKGFVTKSKLGCHIRIHAKEKPYESQVCQKKFSQKHTRDVHMRVHTSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00030278;
90% Identity
iTF_00030278;
80% Identity
iTF_00030278;