Abig001549.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus biguttatus
Gene Symbol
ECU03_0790
Assembly
GCA_963921985.1
Location
OY998117.1:33277666-33279940[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.6e-07 1.1e-05 25.8 2.2 1 23 179 201 179 201 0.99
2 10 1.2e-05 0.00086 19.9 1.5 1 23 209 231 209 231 0.97
3 10 2e-05 0.0014 19.3 3.3 1 23 237 259 237 259 0.98
4 10 1.9e-05 0.0013 19.3 0.2 1 23 268 290 268 290 0.98
5 10 2.4e-07 1.7e-05 25.2 0.5 1 23 296 318 296 318 0.96
6 10 6.1e-06 0.00043 20.8 3.0 1 23 324 346 324 346 0.99
7 10 4.5e-06 0.00032 21.3 0.4 1 23 352 374 352 374 0.98
8 10 0.00016 0.011 16.4 0.6 3 23 382 402 381 402 0.99
9 10 5.8e-06 0.0004 20.9 1.3 1 23 408 430 408 430 0.98
10 10 3.5e-08 2.4e-06 27.9 0.3 1 23 436 458 436 458 0.98

Sequence Information

Coding Sequence
ATGaacattaaaatagaaaactttcaaaatatttgtagaacATGCTTGCAACATCATTCTCCTAGGAAGAAGGTATatgatttagaattttattCGCCAAAGAACAATATCAATGTAGtggattttatttacaatttgacTCATATAAAGtTTGAAAAAGGGGATGGTCTTCCAGAACACCTATGTActatatgtattaaaaaagttaatgAAGCCTATGAATTTTCATTACTGTGCCACAATTCCCACACAAAACTGCAACAAAGTCTAAAAGAATGCTACGAGGACAATGACGCAATAAGCAAACAAACTAAATCTTCTAATGTTGTACAACTCGAAAATGAGAACGAAAATAGCTCTTTGGAACATCCAATTGAAATTATTCACTTTAACAGCAATAATTATAATGATTATGAGATTATTCATGAAAACAGCAGTGATAATGGATGTGCaaacaataaaatcaattttgataACATAAACcatgaaattttagaaacagaaaaattaaataaatatgctaAACCAAAAATCTACAAGTGTGAATGGTGTGATAAATCTTTTGTTAGAAAGGTGCATTTGACAATACATTTAAAATCTCATTCCAAAACTAATGAAAAACAATATATCTGTGAAGAATGTGGTAAAAGTTACTCTTATTTATACCTTCTAAGACAGCACAGGTTCAAACACACAGAAGTTAAACCATTTCCTtgtacaaaatgtaataaaggtTGCATGACAAGGGAGAGCTTAAGACGACATATGAAAATTCATGATGcgaattataaaagaaaaaagtatgTTTGTGAAATTTGTAGGAAGGATTTTCCATACCCAAGCTTCCTTGCAGAGCACATGAAAAATCATACGGGTGAGCGCCCTTTTCTTTGTTCAATTTGCGGTAAAGGTTTCAGACAAAGCGGCGCCCTTCGGTATCACATGAGATCACATACAGGAAGTAAACCTTATGAATGCAAAGTTTGTCACAACAGATTTATATCGAAAGGTACTTTGCGTGTGCATATGAGGAAACACACAAATGAACGACCTTATGTATGTGATCTTTGTGGAATGGCTTTTCGTCAAAGCACCGACATGAAAAGCCATCGTCGAATCCATACAGGTGACAAGCGAGTTCTGTGTACTGTTTGTGGCAAAAGAATGTCTACTACAGGTCAACTAACAATTCATCTACGAACGCATACAGGAGAAAAACCTTATTCGTGCAATACTTGTTCAAAAGCATTTACAACAAGAACAATGCTAGTCAAACATGAACGTATTCATACGGGAGAGAGACCGTATGTATGTAATATTTGTGGTCGTGCATTTAATCAAAGTAGTACTCTTAAAACACACATCAACGTTCATAATGGACAAAAATCAAAGACTGGTCAAAAACAGGTCCATTTAAAAGGGTCTGTTGTAAATAACGGCTTAAGACTTAATATTAATGACGCACTTTTGCGATCAAATATAATGCAAGCAACTGTTAACAAAATTGAATCTGAAGGAGGAAgtgaaatatatacataa
Protein Sequence
MNIKIENFQNICRTCLQHHSPRKKVYDLEFYSPKNNINVVDFIYNLTHIKFEKGDGLPEHLCTICIKKVNEAYEFSLLCHNSHTKLQQSLKECYEDNDAISKQTKSSNVVQLENENENSSLEHPIEIIHFNSNNYNDYEIIHENSSDNGCANNKINFDNINHEILETEKLNKYAKPKIYKCEWCDKSFVRKVHLTIHLKSHSKTNEKQYICEECGKSYSYLYLLRQHRFKHTEVKPFPCTKCNKGCMTRESLRRHMKIHDANYKRKKYVCEICRKDFPYPSFLAEHMKNHTGERPFLCSICGKGFRQSGALRYHMRSHTGSKPYECKVCHNRFISKGTLRVHMRKHTNERPYVCDLCGMAFRQSTDMKSHRRIHTGDKRVLCTVCGKRMSTTGQLTIHLRTHTGEKPYSCNTCSKAFTTRTMLVKHERIHTGERPYVCNICGRAFNQSSTLKTHINVHNGQKSKTGQKQVHLKGSVVNNGLRLNINDALLRSNIMQATVNKIESEGGSEIYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00032241;
90% Identity
-
80% Identity
-