Abig013732.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus biguttatus
Gene Symbol
-
Assembly
GCA_963921985.1
Location
OY998123.1:28904205-28910030[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.26 18 6.3 4.7 1 23 37 60 37 60 0.95
2 25 3 2.1e+02 2.9 0.2 2 20 66 84 66 88 0.78
3 25 1.1 78 4.3 4.1 1 14 100 113 100 123 0.81
4 25 0.00078 0.054 14.2 0.4 2 23 129 151 129 151 0.96
5 25 0.061 4.3 8.3 3.3 1 23 161 184 161 184 0.96
6 25 4e-06 0.00028 21.4 2.1 1 23 219 241 219 241 0.98
7 25 0.0013 0.093 13.5 2.4 2 23 251 272 250 272 0.96
8 25 0.0019 0.13 13.0 0.1 2 23 279 301 278 301 0.94
9 25 4.7e-05 0.0033 18.0 1.7 1 23 307 329 307 329 0.96
10 25 0.058 4.1 8.3 1.6 1 13 335 347 335 349 0.89
11 25 2.4e-05 0.0017 19.0 2.7 1 23 370 392 370 392 0.98
12 25 8 5.6e+02 1.6 1.6 1 23 397 420 397 420 0.92
13 25 5e-05 0.0035 18.0 0.2 1 23 426 448 426 448 0.98
14 25 0.1 7.1 7.6 0.3 1 19 454 472 454 475 0.97
15 25 3.4e-06 0.00024 21.6 0.8 1 23 482 504 482 504 0.97
16 25 0.00074 0.052 14.3 3.0 1 23 513 535 513 535 0.99
17 25 4.1e-05 0.0029 18.3 0.1 1 23 541 563 541 563 0.95
18 25 8.5e-07 5.9e-05 23.5 0.3 1 23 569 591 569 591 0.98
19 25 0.94 66 4.5 2.0 1 20 673 692 673 694 0.92
20 25 0.63 44 5.1 5.1 1 23 700 722 700 722 0.96
21 25 2.2 1.5e+02 3.4 1.1 1 20 887 906 887 908 0.93
22 25 0.0085 0.59 11.0 0.3 2 23 915 937 915 937 0.94
23 25 0.013 0.93 10.3 1.5 3 23 943 963 942 963 0.97
24 25 0.0057 0.4 11.5 4.1 1 23 969 992 969 992 0.96
25 25 6.1e-06 0.00043 20.9 1.5 1 23 997 1019 997 1019 0.98

Sequence Information

Coding Sequence
ATGACGAGGCTTATTTTTTACAGATTTCATCCCAATGTAGAGGAGTGTGTGTTTATCGAAGACTACAAGGTAAAGATGGAACCGGAAGATGCAGATCAGGAGAATGGATTCAAGTGTTATGAATGTCAGGTCACGTTCGTGGACAAAAGAAACATGTTTTGTCACATAAAGCAAAAGCACGAACCCAATTTAAGGGTTTGTAACATTTGCGTGACGGCGTTTAGAAACGAACAGGAACGCGACATTCATAACAACCTGACGCACAAAAATAAAGACAACAAATATAAGAAAACACAGTATAACTGCCCCGAATGTCATTTAACATTTAGTTATAAGCGAGTAATGCTTTGTCACTTCAAGCGCACGCATCAGCCGGCCCTTGCAGTGTGCAAAAGATGCAACACGGTGTTTCCAACTGAAGACGAACTTCACGTTCATTACAAAGTGGCACATATAAGAGGCAACTATCAGAAACGTGATTTCAAATGTACGCAATGTTCGAGAAGGTGTGCCTCGGAGATGAGACTGAAGCAGCACATCCTTCTGCGTCATTCGAACGTGGGCGATATGATAAAGTGCGAAGAGTGCAATGTAATGTTGAAAGTGACTAGCTACGGCGAACATATCACTAACCAGCACGTCAAACGTTCGACGTTTACATGTGACAAGTGCAACAAAGTCTTCCGCAGCGAATCGTATTTTCGAATACACGTGAACACTCACGATCCTAATTACGTTGCGCCggtattaaaatgcaacgagtGCCCTTTCGAATGTTCGTCGAATAAGTCTCTCAAGAAGCACGAAGCCACTCATAACAAGTCGAATCTCTTAATGTGCGAATATTGCGGAAAATATATCGCCTCCAGTAACAGCCTGCGGACGCACATAACGGTGGTGCACGCTGGCGAGAAACCTCACTCTTGTGAGTATTGCGGTAAAGATTTCGGAAGTCAGAAAACACTGAAAGTTCATCTGCTGCAACATACGAAAGAAAAACCGCATACATGCAACTATTGCGAGAAACGTTTCACTCAACGCAATTCATCGACGAGTCGTAGAGTAAAGAACGGGACGAAGAAGAAAGAGAAACTCTCCCTTAAATGGTTTCAGTGTTCTTATTGTTCGAAGAACTTCGACAACAGGATTCAATTAAAAAACCACGTTCGTTATCACAAGGAAAAAAAGTTTGCCTGCGATCTGTGCAATCAAAAGTATCTTTTCCGTTATCAAGTAGCGTATCATAAGAAAACGTCTCACGTGAAAGAGCTCTCGTTTATTTGTGATATTTGTGACAAGGGTTTTGTTGCCAAAAGCGTTTTAAAGTCGCATTTGCAGACTCattctaaaaattataaattcaaatgcGACAAGTGCAGTGCGGGTTTTCCCAGCAGACACTTGCTCGACCAACACGACGATATCCAGCACAAAGGGGAAAAATACATTTGTCCGAAATGCAACAAGGCTTTTGTAAATAGGCAGAATTTTAAAAAGCACGTGGCCTCACACGAACCGGGATTCATAAAAAAAGAGTTCAAATGTGAAATTTGCTCGAAAGTGTTGCAACATCCACGGACGTACTCGAATCACATGAAAACTCATACCGGTCGCGATTATCACATTTGCGAAATATGCGGAAAATCAGTGACCACCGCGGCCAGTCTTAAAAACCATGTCATCCTTCACATGGGCGAGAAACCGTTCGTATGCGACGTTTGCGGCAAAATGTTTTCGAACAGGAAATTGCTTGTTGCCCATAAACGCGTTCATACGAAAGAAAAACCTTATATGTGTGGATCCTTTAAATTTGTTCGTGACGTCAAAGATGTTAAGAGAGGAAGACGTTTCTTCGTCGACGATGTTCGTATGCAGCACGTGTCAGCAACGATTCAATCGCGTGGATCTGAAGAACCACGTGTACAATGCGGACCTGGGAGTTTACGTGTGCTaTTGGACGATCCTTTGTCGAACGATTACGAACAAGAAACGTCTCAGTCTGGCACTCAAATGATTTACGAATGCGAAATATGTACACAGATATTCGCGTGTAAAAAGGAATTTCTTAAACACCACGTAAGTGAAATCGACAACACGTTCAACTGTTGTCGGTGTCACGTAAGCTTCTATAACACGAACGATCTGTACGAGCATTACGAGGTTCATAAGAACGATCCGATCGTCATGTCAGAGACCGAGTTCGATTGTACGGAGAATATCGAAGCCGTCATGAACATCCCGAACGAGGAATCGATCAACGACTCGTCGTCGAACGAGCTGCTCTACATATTGGACGATTCGCAATGCGTTAACGAAGTGGTGATCGACGAGGTTTCAGAAATAACGAACGAAAAACAGGAGAATAGCAGCAGTAAACGCGAAAATAGTTACGCAATAGTACAGTTCGAACACGGCTACGTGTTACCTAAACTGTTAAAGGGACAACTTGATTCCAAGCGGAAAGCAACGCCTCGGAAGGAGGGCCCTTTCGTAACGGTAAAGACTCAAAAGAGTAGCAAAAGTAAATCGAACCTTCTCATTAAGAGGACAACTTGTCCTCCGCCACTGCTACAGCCCAAAAGACGACACGAAATGCCCGACTTTTCATCTACAAACTACATCATCCTCAATCCGAACGAGGAGGTCGACATACCCCATTTCAAGTGTTTGCGATGCGAAcagttgtttattaataaatttgtgttcttCCGACATGTAGAGAAGGGAAAGTGTTTCGTGAACAGTTGTGATGTGTGCAGCGCCACGTTTAACAAGAATTCGGAGTTTTATAATCATTATATCGTCGAACACACTGACAGGGCGATTTGCAACTTCTGCTTCCGAACGTTCATGTACGAGAAGAACGTTAAGGAACATATGCTAAGACATCTCGATCAGTTTAGGCATCGTTGCGAGGAATGTAATAAAGGTTTCTATACGATACGCGAATATagaaatcattataaaaatcgACACATGGGCATTAGACACAAATGTGACGTATGCGGTAGGTCGTTTGCCGATGAGTATTATTTTAAAAGGCACGTTGCCACCCACGTCAAAGCtcttcataaataa
Protein Sequence
MTRLIFYRFHPNVEECVFIEDYKVKMEPEDADQENGFKCYECQVTFVDKRNMFCHIKQKHEPNLRVCNICVTAFRNEQERDIHNNLTHKNKDNKYKKTQYNCPECHLTFSYKRVMLCHFKRTHQPALAVCKRCNTVFPTEDELHVHYKVAHIRGNYQKRDFKCTQCSRRCASEMRLKQHILLRHSNVGDMIKCEECNVMLKVTSYGEHITNQHVKRSTFTCDKCNKVFRSESYFRIHVNTHDPNYVAPVLKCNECPFECSSNKSLKKHEATHNKSNLLMCEYCGKYIASSNSLRTHITVVHAGEKPHSCEYCGKDFGSQKTLKVHLLQHTKEKPHTCNYCEKRFTQRNSSTSRRVKNGTKKKEKLSLKWFQCSYCSKNFDNRIQLKNHVRYHKEKKFACDLCNQKYLFRYQVAYHKKTSHVKELSFICDICDKGFVAKSVLKSHLQTHSKNYKFKCDKCSAGFPSRHLLDQHDDIQHKGEKYICPKCNKAFVNRQNFKKHVASHEPGFIKKEFKCEICSKVLQHPRTYSNHMKTHTGRDYHICEICGKSVTTAASLKNHVILHMGEKPFVCDVCGKMFSNRKLLVAHKRVHTKEKPYMCGSFKFVRDVKDVKRGRRFFVDDVRMQHVSATIQSRGSEEPRVQCGPGSLRVLLDDPLSNDYEQETSQSGTQMIYECEICTQIFACKKEFLKHHVSEIDNTFNCCRCHVSFYNTNDLYEHYEVHKNDPIVMSETEFDCTENIEAVMNIPNEESINDSSSNELLYILDDSQCVNEVVIDEVSEITNEKQENSSSKRENSYAIVQFEHGYVLPKLLKGQLDSKRKATPRKEGPFVTVKTQKSSKSKSNLLIKRTTCPPPLLQPKRRHEMPDFSSTNYIILNPNEEVDIPHFKCLRCEQLFINKFVFFRHVEKGKCFVNSCDVCSATFNKNSEFYNHYIVEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTIREYRNHYKNRHMGIRHKCDVCGRSFADEYYFKRHVATHVKALHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-