Abig013719.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28853936-28857996[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0027 0.19 12.5 0.9 2 21 68 87 68 87 0.95 2 23 0.0016 0.11 13.2 0.8 2 20 147 165 147 167 0.94 3 23 0.029 2 9.3 0.2 2 23 222 244 221 244 0.92 4 23 0.034 2.3 9.1 0.8 1 23 248 270 248 270 0.97 5 23 0.67 47 5.0 1.9 1 23 276 299 276 299 0.97 6 23 0.0092 0.64 10.8 1.0 1 23 305 328 305 328 0.91 7 23 3.3e-05 0.0023 18.5 4.3 1 23 334 357 334 357 0.95 8 23 0.23 16 6.4 1.4 2 23 364 386 363 386 0.93 9 23 0.00012 0.0082 16.8 0.1 1 23 391 413 391 413 0.97 10 23 0.00077 0.054 14.2 2.9 1 23 419 441 419 441 0.97 11 23 4.8e-07 3.3e-05 24.3 1.3 1 23 447 469 447 469 0.99 12 23 0.00045 0.031 15.0 0.4 1 21 475 495 475 496 0.95 13 23 3.7 2.6e+02 2.6 2.3 1 17 577 596 577 597 0.84 14 23 0.0086 0.6 10.9 0.5 2 23 629 650 629 650 0.96 15 23 0.004 0.28 12.0 0.4 3 23 656 676 654 676 0.98 16 23 1.6 1.1e+02 3.8 0.3 1 23 682 705 682 705 0.89 17 23 0.026 1.8 9.4 1.1 1 23 711 734 711 734 0.85 18 23 4.3e-05 0.003 18.2 1.2 1 23 740 763 740 763 0.95 19 23 0.00068 0.047 14.4 4.7 1 23 771 794 771 794 0.97 20 23 2.2e-07 1.5e-05 25.4 0.3 2 23 800 821 799 821 0.96 21 23 0.00085 0.059 14.1 1.3 1 23 827 849 827 849 0.98 22 23 7.9e-06 0.00055 20.5 1.3 1 23 855 877 855 877 0.98 23 23 2.2e-05 0.0016 19.1 0.4 1 21 883 903 883 904 0.95
Sequence Information
- Coding Sequence
- ATGAAACCATTGGCGTTAACAAATTTGCTAATCGTATTCAATCCtaatatcaatttaaatttGACAGCAAATACAACGCAAACTACACAAAAAGAAACTCTACCTAATGCAAACGTCCACCTAAAAAACATTAACAGTCATGATACGGATAACAAAGGTCAAAATATAAACGAAGAAAGTGAAACATTCTACAAGCAGCGAACATGTAAACATTGCGGCACAATTTACAACACCTTACGGGAACTCAAAGAGCATCTTAAATGCGTagagaaaaaatatttctgCCATCATTGTGAGAACCCAAAAAAAATAACCGAACAGGAACTTGTAGATCATTGTAAATCAGTGGGAATCGATTATAAAACGAAGAACTTCTTCCAAATTGcgatgaaaaaaataaaaacggaagaaaataaaacatcaGTCGACAAAAAGCCGACATGTAAATATTGCGGTACAATTTATAATACGTTACGAGATCTCAGACACCATCTTACGTACGAAGAGAAAATATACTTATGCCATCATTGTGATAACCCGAAAAAAATTACTAAGCAAGAACTTATTGAACATTGCAAATCAGTAGGAATCAACTATAACAAAAGACATTTCTTCCGGAAGGCAGCGAATGAAAATGCACGAAAGACAGTCCTTCGTATATTGTATTGCGAAATATGCTCTGCAGAATTTGAGAACAAAACGCAAATAGAACGGCACTACGAAGAATCACACAAGAACCATTACAAATGCGAAGTGTGTAACGAAGGATTTAAAAAGATACTcgaatatatttttcatatgaAAACTCACAGCGAAGACAACCTCTACAAATGTGCCCTCTGCAGTTACACGACACGAACCCGCACAATTATCAATCAACACTTAAAGACCAAGCACGACCAGTTCATGAATTATAGGTGCAAAGTTTGCGGAAAAGGGTTCTCTATAATTGGCGTTTTTAAAGAACACACCAAATATTTTCATACCGGCGAACGCCCGTTTCAGTGCGACCATTGCGGCAAGAGGTTCATGCACTCCGGATACCTGAGAACACACATTACTTATGTTCACAAAGTTCGTACTGAAAACAAATGCGCCCTTTGCGGCCTCTCTTTCCCATCGTATTGTATTCTGAAGCGTCATCGCGTCAAGGAACATCGGAAACAATTGTACATATGCGAAGTGTGCGGAAAAACATTCGACACATCACCACCGCTTACTTTGCATTCTAAGATACATTCTGACGAGAAAGCGTACGCGTGTTCGTTCTGCGAGAAAAAATTCAGACGTAGGTGCTTGTTGGTTGAACACGAACGTATTCATACCGGTGAGAAACCGTACGTGTGTCCGCATTGCGGCAAAGGATTTTCGCAACGCAGCAGCATGGTCATACACACGAGAAGACATACAGGGGAACGTCCCTATGTATGTCAGTTGTGCAATAAAGCATATGCTTCAAGAAACTTACTGACAAATCATCGAAAAAGATGCTGGCTTTTTGTCAGTCAGATATCAATATTCGACAAATCATTGGAGTCGTCGTTAGTTACTAAGGTAGATCAGCATAAGGCAAACGTAAACTATCAAAAGAATAAGACCGTTAGTAAAAAGATTACTACTGACAAATATTCACCGGAAAGCAGGGACGGAGTATGTCggtattgtaaaataaaattcgatgACGAAAAAGAACACGAAGCGTACGCTGCCGCCCGGGAAgaaaaaattttcttttgtcaTTCTCACAGTAACTGTGAAGAGAAGTTCACACGACATGGCCTTCTAAAACACTGCAAAGAATTCGGTGTTCACATATCTAGTGTCCGACAGTTGTTTTTGAAGGCCAGATCGAAGAATCCGAGGGCGAAACGTCAGGAACAGGAAACGTGTGAAATTTGTTCTGACGTTttcgaaacaaaacaaaaactcgAGCGTCATTACGACAGTCATGAAAACCAATACGGTTGCGAGTATTGCCGGTTGGGTTTCAAGAGAATCATGGACTACGCGACCCATATGCAAACCCACAGCGAGGACAAATTATTCCGATGTCCACTGTGTCCAATCACCAAGGACAAAGGTTACTTGTTGCGATGGCACATATTCAGCACTCATGaacaattcaaaaaatacaaatgtgACACGTGCGGTAAACGTTTCCCAGCGTTCCCTTCCTACGACGAGCATGTCAAGTATTTTCATTCCGGTGAGAAGCGGTTCGTTTGCGAAGAGTGCGGCAAAAAGTTTATGTACTCTTCGTATCTGGTATCGCACAAACGATTCGAACACGAAAGAAACCCGGAAACAGCGTTCAATTGTTTATATTGTCAACTGAAATTCCCCACCAAACGTCATATGCAAAGACACCTCCGTTCCCAGCATCCCATAGCACTTCTCGTCTGTGACATTTGCGGCAGACGATTTAAAACGAAAGAAAATCTGAAGATTCATTTAAATGTACACAGAGGCGAGAAGAAATATCAGTGTTCGTTTTGTTCAAAGAAATTCGTTACTAACGGTGCTAAGAAGGAACATGAAAGGGTTCATACCGGCGAAAAGCCTTTCAAATGTCCCTATTGTAAGAAAGGTTTCACCCAAAGAAAGAGTATGGTGATACACTTACGGGGTCATACTGGGGAACGACCTTACGTATGTCACATTTGTAATCGGGGTTTCACATCAAGAAGTGCTCTAGTATTACATTTGAAAAAGTGTAAAGGAAGGGATGattga
- Protein Sequence
- MKPLALTNLLIVFNPNINLNLTANTTQTTQKETLPNANVHLKNINSHDTDNKGQNINEESETFYKQRTCKHCGTIYNTLRELKEHLKCVEKKYFCHHCENPKKITEQELVDHCKSVGIDYKTKNFFQIAMKKIKTEENKTSVDKKPTCKYCGTIYNTLRDLRHHLTYEEKIYLCHHCDNPKKITKQELIEHCKSVGINYNKRHFFRKAANENARKTVLRILYCEICSAEFENKTQIERHYEESHKNHYKCEVCNEGFKKILEYIFHMKTHSEDNLYKCALCSYTTRTRTIINQHLKTKHDQFMNYRCKVCGKGFSIIGVFKEHTKYFHTGERPFQCDHCGKRFMHSGYLRTHITYVHKVRTENKCALCGLSFPSYCILKRHRVKEHRKQLYICEVCGKTFDTSPPLTLHSKIHSDEKAYACSFCEKKFRRRCLLVEHERIHTGEKPYVCPHCGKGFSQRSSMVIHTRRHTGERPYVCQLCNKAYASRNLLTNHRKRCWLFVSQISIFDKSLESSLVTKVDQHKANVNYQKNKTVSKKITTDKYSPESRDGVCRYCKIKFDDEKEHEAYAAAREEKIFFCHSHSNCEEKFTRHGLLKHCKEFGVHISSVRQLFLKARSKNPRAKRQEQETCEICSDVFETKQKLERHYDSHENQYGCEYCRLGFKRIMDYATHMQTHSEDKLFRCPLCPITKDKGYLLRWHIFSTHEQFKKYKCDTCGKRFPAFPSYDEHVKYFHSGEKRFVCEECGKKFMYSSYLVSHKRFEHERNPETAFNCLYCQLKFPTKRHMQRHLRSQHPIALLVCDICGRRFKTKENLKIHLNVHRGEKKYQCSFCSKKFVTNGAKKEHERVHTGEKPFKCPYCKKGFTQRKSMVIHLRGHTGERPYVCHICNRGFTSRSALVLHLKKCKGRDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -