Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998119.1:29227613-29231161[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2e-07 8.2e-06 26.3 1.0 1 23 328 350 328 350 0.98

2 12 8.8e-07 6.2e-05 23.5 7.3 1 23 356 378 356 378 0.98

3 12 4e-06 0.00028 21.4 0.8 1 23 384 406 384 406 0.99

4 12 0.27 19 6.2 3.2 1 23 412 434 412 434 0.95

5 12 0.00026 0.018 15.7 1.6 1 23 440 462 440 462 0.98

6 12 6.2e-08 4.3e-06 27.1 3.7 1 23 468 490 468 490 0.98

7 12 2.5e-06 0.00018 22.1 0.4 2 23 496 517 495 517 0.97

8 12 2.2e-05 0.0015 19.1 4.5 1 23 523 545 523 545 0.99

9 12 2.2e-06 0.00015 22.2 1.5 1 23 550 572 550 572 0.98

10 12 1.7e-07 1.2e-05 25.8 0.9 2 23 579 600 578 600 0.97

11 12 9.2e-08 6.5e-06 26.6 0.5 1 23 606 628 606 628 0.97

12 12 3.1e-06 0.00021 21.8 2.5 1 23 634 656 634 656 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2e-07	8.2e-06	26.3	1.0	1	23	328	350	328	350	0.98
2	12	8.8e-07	6.2e-05	23.5	7.3	1	23	356	378	356	378	0.98
3	12	4e-06	0.00028	21.4	0.8	1	23	384	406	384	406	0.99
4	12	0.27	19	6.2	3.2	1	23	412	434	412	434	0.95
5	12	0.00026	0.018	15.7	1.6	1	23	440	462	440	462	0.98
6	12	6.2e-08	4.3e-06	27.1	3.7	1	23	468	490	468	490	0.98
7	12	2.5e-06	0.00018	22.1	0.4	2	23	496	517	495	517	0.97
8	12	2.2e-05	0.0015	19.1	4.5	1	23	523	545	523	545	0.99
9	12	2.2e-06	0.00015	22.2	1.5	1	23	550	572	550	572	0.98
10	12	1.7e-07	1.2e-05	25.8	0.9	2	23	579	600	578	600	0.97
11	12	9.2e-08	6.5e-06	26.6	0.5	1	23	606	628	606	628	0.97
12	12	3.1e-06	0.00021	21.8	2.5	1	23	634	656	634	656	0.98

Sequence Information

Coding Sequence: ATGTCAAACCCTCAGAacttatttattcagaacaatcCAAATGTAATCATaatggaaaatatttttcatattgCAGATTGTTGTCGAGCATGTCTTCGAATAGAATGTTCATTAACTCCGACAACGACGTTAGATAACGATTCTGTAAAGTTTTGTGACAAATTACACGCGTGTGTTTCTGAAGTTGCCTGGATGAAGGAAGGACTGCCCTCTCTTATTTGTTCAACATGCATAGAAAGACTGCGTGTAGCCtatgattttagaaatgtttgtTTACAGTCAGATCAAACCTTACAGAAGTATGTAAGTCATTTGCAACATGATTTTAAGGAACCCATGCAAAATAACCAACAACCTTTAACAGTGTCAAAATTTGATCTCTCATTACTATCacaaaatcaagaaaatttgCCTTGTATAGTTGAAGAGCCACAGAATGCTGAGTATTtgcatttaaaacattttttggaTAATGATGAGGACCTATCCAAATCAGATAATTTAGCTGATGCTACAACATCTAGAAGTAGCAGTCCAGAAACAGTTAGAGTAGTTAGTAGTTTTTTACATGAGCCTCAACAGTTGCCAGAACAACAACCACAACAATTACTTCATCAAACGTTTCATCATCACCAGCAACACCAACATGCTCACCAGAGTCAACAGTCACATTTGTCACTTGAAGAACAACAGCCACAGCATCCTCAAAACCATCTAACTCAGCAGACAATTCATAATCAATCGAAATATCAACAACAAATACAACCAGCaaaccaacaacaacaatttGATAATGTTCTGCAACACCCACAGATTTTGCACAACCAATCAATTAGTCAAATAAGTCAAGACCCTGAGACAAGGGATCAAGCTAAACATGAATCAAAGACACCAAAGCAAGTTATAATGCGCACGATGGGAATACAGGTACGTCCTCCGACACCATCATCTTTACAAGCAGATGgaaagaacataaaaatgttCACTTGTACAATTTGTGGGAAAAGCTATAGGAAAAATGCAAATTTAAGAGTCCATACACGAATTCATACGGGAGAAAAGCCATTTGAATGCAAATACTGTGATAAACGTTTTTACCATTCTTCCCATCTCAGAGAGCACATTCGACGACATACAGGAGAGAAACCATTTCAGTGTGCTATATGTAATAAACGGTTTACCATAAGAGGTGAACTGACAATGCATATGAAATCGCATACAGGGGAGAAGCCTTATGCGTGTACATGTTGCAATAGACGATGTTTAACCGCAGCTGATCTTAAGCTTCATATGCGCATTCATACAGGCGAAAAGCCGTTTATGTGTAACACGTGTGGTCGACATTTTGCTAGCACGTACATTCTTAATGCTCACATTAAAACGCATACAGGCGAGCGGCCCTACAGTTGTCTCGTTTGCAATAAGACATTTACGCAGTCTTCTCATCTGCAAGTTCACATGCGAAAACACACAgGTGAGAAGGTAAGTTGTAAAGTTTGTGATGCAAAATTTTCGTATTCGTCGCAGCTGACAATCCACATGCGTGAACATACGGGTAAGCAACCTTATAAGTGTACATTATgcgataaaaattgtaaatatgcGTCTGAGTACGAGACGCATATGCGCAAACACACCGGTGAGAAATTCAGTTGCAATATTTGCGACAAGAAATTTATGACTGCATCGTACCTTCAGGAACATAATAGGACGCATACGGGTCAAAATCTGAGCACGTGCGGCATCTGTGATAGacaGTTTACGAGACCCACGTATCTGGAAAAGCACATGCGCACTCATACTGGTGAAAGACCATATGCGTGCGTTACGTGCGGTAAAAAGTTCACGCAGTCCTCATCTCTTAAAGTTCACATTCGGATACATACGGGAGAAAAACCTTTCCAATGTCAGATCTGCGATCGACGGTTTACAACGTCTTCCGATCTGTCCTCGCACAATAAAAAACATGACAAAAAGTACATTAGTTTGTAG
Protein Sequence: MSNPQNLFIQNNPNVIIMENIFHIADCCRACLRIECSLTPTTTLDNDSVKFCDKLHACVSEVAWMKEGLPSLICSTCIERLRVAYDFRNVCLQSDQTLQKYVSHLQHDFKEPMQNNQQPLTVSKFDLSLLSQNQENLPCIVEEPQNAEYLHLKHFLDNDEDLSKSDNLADATTSRSSSPETVRVVSSFLHEPQQLPEQQPQQLLHQTFHHHQQHQHAHQSQQSHLSLEEQQPQHPQNHLTQQTIHNQSKYQQQIQPANQQQQFDNVLQHPQILHNQSISQISQDPETRDQAKHESKTPKQVIMRTMGIQVRPPTPSSLQADGKNIKMFTCTICGKSYRKNANLRVHTRIHTGEKPFECKYCDKRFYHSSHLREHIRRHTGEKPFQCAICNKRFTIRGELTMHMKSHTGEKPYACTCCNRRCLTAADLKLHMRIHTGEKPFMCNTCGRHFASTYILNAHIKTHTGERPYSCLVCNKTFTQSSHLQVHMRKHTGEKVSCKVCDAKFSYSSQLTIHMREHTGKQPYKCTLCDKNCKYASEYETHMRKHTGEKFSCNICDKKFMTASYLQEHNRTHTGQNLSTCGICDRQFTRPTYLEKHMRTHTGERPYACVTCGKKFTQSSSLKVHIRIHTGEKPFQCQICDRRFTTSSDLSSHNKKHDKKYISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032234;
90% Identity: iTF_00032234;
80% Identity: -