Abig013705.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:28778612-28781859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00092 0.064 14.0 0.2 1 23 6 29 6 29 0.94 2 21 0.017 1.2 10.0 0.3 1 23 33 55 33 55 0.98 3 21 0.082 5.7 7.9 0.2 1 23 61 84 61 84 0.93 4 21 0.00062 0.044 14.5 1.6 1 23 90 113 90 113 0.95 5 21 8.7e-05 0.0061 17.2 1.0 1 23 119 142 119 142 0.95 6 21 1.2 81 4.2 0.3 3 10 152 159 150 173 0.78 7 21 2.2e-06 0.00015 22.3 2.0 2 23 179 200 178 200 0.97 8 21 0.0016 0.11 13.2 7.5 1 23 206 228 206 228 0.98 9 21 2.8e-07 2e-05 25.1 2.4 1 23 234 256 234 256 0.99 10 21 0.44 31 5.6 9.1 2 23 263 285 262 285 0.97 11 21 0.0024 0.17 12.7 1.9 2 23 334 355 333 355 0.96 12 21 0.29 20 6.1 0.5 1 23 376 398 376 398 0.94 13 21 0.021 1.4 9.7 1.4 1 23 402 424 402 424 0.97 14 21 0.13 8.9 7.3 1.8 1 23 430 454 430 454 0.97 15 21 0.00031 0.021 15.5 2.7 1 23 460 482 460 482 0.97 16 21 0.002 0.14 12.9 1.5 1 23 488 511 488 511 0.95 17 21 0.0062 0.44 11.4 1.7 2 23 523 544 522 544 0.97 18 21 1.8e-06 0.00013 22.5 0.9 3 23 558 578 556 578 0.96 19 21 2.9e-06 0.0002 21.9 1.1 1 23 584 606 584 606 0.98 20 21 1.1e-05 0.00077 20.0 0.3 1 23 612 634 612 634 0.97 21 21 0.00029 0.02 15.6 0.9 1 21 640 660 640 665 0.95
Sequence Information
- Coding Sequence
- ATGTGCAAAGAAAGGTACCAGTGCGAAATTTGTTCAGAGTCATTCGAAGCATGGACGAAACTAGAAACTCATTACGACAATGTTCACGAAAATCATTACGTTTGTGAAGAATGCAAGGCAGGTTTCAAAAAAATCATGGAATACACATTACACTCACGAATCCACAACAAAAATAACTTCTACCAATGCCCTCTGTGTCCTGTGACAAGGCGCAAGGCCCAACAGATCAGAGCCCATTTGTACCAGACCCACGaacaattcaaaaaatacaaatgtgACGTTTGTGGTAAACGATTTTCGGAATACCCATTTTATCAACAGCACGTCCAATATTACCACAGCGGCGAAAAACCATTCGCCTGCGACCAATGCGACAAAACATTCGTTTACTCGCGTTACCTATGGACTCACAAAAAACTGGAACATGTTCTCAAGACACCCGACAGGGTTATATGTCCCATTTGTGGGAAAAGTCTTCTAAGTCCGCAAATACTCCAAATCCATTGTCGAATGCAACATTCAAACGAAGCATCCGTCTGCGATATCTGTGGCAAAATGTTCACTTCCAAGTGCAATTTAAATTTGCATTACAAAATCCACGTCGCTGAGAAATTGCACAAATGTTCCTATTGCGATAAGGGATTCAGCACTAAAACCTGTAGAGTTAAACACGAACGGACACATACTGGTGATAAACCTTTTAAATGTTCGTACTGTAAGAAAAGTTTTTCACAAAGGAGCAGCTTGGCCATTCACGCGAGACGACACACTGGTGAAAAACCGTCTCAATGCCACACTTGTAGTCATAAATCTGTGTCAAAAAAACAACTTACGAATCACTTAAAGAGCTGCCATGGGATACTACAACAAGATGACGACAAAAGaaaaataGAGATTAAACACGAAAGTTCAGAATCTTCAAACGATCTTAACCACGACGAATGGTCACCGTTTACTTACTATAAAAAGCCACAAAACCgaagaattaaaagaaaatggtCATGCGCAAGATGCAGAGAAGATTTCGAGACAAGCACAAAACTTCGCAAGCACAGAAAAACGCATCGAAAGGACAAATATGACGATACCCAGTACAGCTACAATTTTGATCCTGCCAAAGACATATACAGTTGCATCACGTGCGACATAGAATGTCCATCAAAAAAAGAAATCGAAAAACACGTTCTTACTCACAAAGACCATTTCTCGTGCGAACAATGCGATTTGTTCTTCGACGAACCGTACAAATACGCCACTCACGTCCATATGCACAGCGATGACAATTTGTTTCGATGTCCTCTGTGCGATGCGTACAAAACACCCAATCGCACTTGCCTCCTCACTCACATTAACACGTTCCATCTTCATCGATTCATATACAGGTGTTCGACGTGCGGCAAGGGTTTCAACGATTGCGTCCAGTTCAAAGAACACAATAACATTCACGAAGGTCTCAAACCGTTCAAGTGCGTCGTCTGCGGCAAGGGATTTCCCTTCTCTCTCTATCTGCACACGCACCAAGTTCGCAATCACAGGGCAACCATAGACGGGGTGCTCGGAATCAACCAGTGTTACATCTGCATGAAAAACTACGTCAACACCAGGACGTTACAGAAGCATATGCTTAAGCACAGCACCATAGAAAAGAAGAACGACGAAAAAAACCACCTGTGTGACATATGCGGAAAAGGTTTCGCTAGAAAGGATAAGCTGAATATACACTACAGGGTTCATACAGGAATTAAACCGTACAGTTGTTCCTATTGCCCGAAAAGCTTTACTAAAAGGGATTATCTGGTTATGCACGAAAGGGTTCACAGTGGTGAGAAGCCATATGCTTGCGAATATTGTGGAAAATGTTTCAACCAAGGGGCCCCATTAAGAGTTCATATAAGAGGACATACGGGAGAACGCCCTTACGTCTGTCACATTTGTAATTCTGGTTTTACATCGCGCGGTGCCTTAAACATACACCTTAGAGGTTGTTCGGGACATAACAGTCCTTAA
- Protein Sequence
- MCKERYQCEICSESFEAWTKLETHYDNVHENHYVCEECKAGFKKIMEYTLHSRIHNKNNFYQCPLCPVTRRKAQQIRAHLYQTHEQFKKYKCDVCGKRFSEYPFYQQHVQYYHSGEKPFACDQCDKTFVYSRYLWTHKKLEHVLKTPDRVICPICGKSLLSPQILQIHCRMQHSNEASVCDICGKMFTSKCNLNLHYKIHVAEKLHKCSYCDKGFSTKTCRVKHERTHTGDKPFKCSYCKKSFSQRSSLAIHARRHTGEKPSQCHTCSHKSVSKKQLTNHLKSCHGILQQDDDKRKIEIKHESSESSNDLNHDEWSPFTYYKKPQNRRIKRKWSCARCREDFETSTKLRKHRKTHRKDKYDDTQYSYNFDPAKDIYSCITCDIECPSKKEIEKHVLTHKDHFSCEQCDLFFDEPYKYATHVHMHSDDNLFRCPLCDAYKTPNRTCLLTHINTFHLHRFIYRCSTCGKGFNDCVQFKEHNNIHEGLKPFKCVVCGKGFPFSLYLHTHQVRNHRATIDGVLGINQCYICMKNYVNTRTLQKHMLKHSTIEKKNDEKNHLCDICGKGFARKDKLNIHYRVHTGIKPYSCSYCPKSFTKRDYLVMHERVHSGEKPYACEYCGKCFNQGAPLRVHIRGHTGERPYVCHICNSGFTSRGALNIHLRGCSGHNSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -