Abig000305.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998117.1:4954987-4958512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9e-05 0.0013 19.3 1.8 2 23 153 174 152 174 0.97 2 14 1.4e-05 0.00097 19.7 1.5 2 23 181 202 181 202 0.98 3 14 0.0011 0.08 13.7 2.1 1 23 210 232 210 232 0.97 4 14 0.0008 0.056 14.2 3.5 2 23 286 308 285 308 0.95 5 14 0.0012 0.086 13.6 6.0 1 23 374 396 374 396 0.97 6 14 0.00025 0.018 15.8 2.2 1 20 402 421 402 425 0.90 7 14 8.8e-06 0.00062 20.3 0.9 1 23 430 452 430 452 0.98 8 14 3.1e-06 0.00022 21.8 1.1 2 23 462 483 461 483 0.97 9 14 7.4e-08 5.2e-06 26.9 1.4 1 23 490 512 490 512 0.97 10 14 2.4e-05 0.0017 19.0 1.6 3 23 524 544 522 544 0.92 11 14 0.00021 0.015 16.0 5.1 1 23 550 572 550 572 0.99 12 14 3.3e-05 0.0023 18.6 1.7 1 23 578 600 578 600 0.96 13 14 1.8e-07 1.2e-05 25.7 0.3 1 23 606 628 606 628 0.99 14 14 8.8e-05 0.0062 17.2 0.1 1 23 634 658 634 658 0.93
Sequence Information
- Coding Sequence
- ATGATGATAATGAAAAACTGTGACGCCGATATGGAAAAAGTTTGTCGTTCTTGCATGAGCGTAAGCTCGGAAATGAGAAGTGTTTTTGATAAAGACGCTTCTAACGGCGAAGCATTACAATTATCGGATATGATTATGATTTGTGCTGAAGTTCAGATTGAAGAAGATGATGGTCTTCCATCTCATTTGTGTTCAGAATGTGAAGTTAAATTGCAAACTGCGTTTACTTTTAAAAAGCAATGTGAAAAATCAGACGCTACTTTCAGAGCTCTCTCCCCAGAAACTCTTGCTAAAGTAGTTATTAAGCAAGAATGTTTAGATAACTTAGACATAGTTGAACAACCAGACATTAACAATGATTCTACAACATATGATGACAACAATTTCTCAGATTCAAGTTGTGGAAACCAAAAAAAAGTTGCAAAACGTGATTCCAAACAAGATAAAACTGATTTAACATGCAATTACTGTTACAAGGTATTACGCACAAAAAAAGGCCTTAAAATTCACATGAGAAGACATACAGGTGAGAAATTGCGTACTTGTGACATTTGTTCTGCTTCATTTACAAAAACTGATCATCTAGTGAGACATATGAGAGTGCATAATTTagaggaaaatcaaaaatacaTTTGCGTTGAATGTGGTTCAGAATTTTCCAAGTCTCATCAATTATCAAAACATAAAAAGGAACACACAACAGCTAAAAACCAAGAAGAATTTAATGATGAGGATGAACAAAATATGAGCAACAATATTTATTCAGATCATGAAAGTGATGAAAGTGTTAAAGTAACTATGAGTAagGAAAGAAGACGTGCAAAACTAGaacaactaaaaaagaaaaagGTAATGGAATGTGAATTTTGTGATAGGAAATTTAAGTATAGAAAAAGTTTTACACATCATATACAGCTGGAACATGGAATGTCTGATGACAATGATATTCCTCTTACTTctgttatttcaaaaaatatgcaAACAAAAGTGTCTCTTGATAAagAAGAAGACGAAGAAGAGGAAGAATCTTCATCTAAAGTTGTTGATGAAAGCAATGCAGATGCTTCATCTAATAACGAATTAATGGACCTAATGTTTGCTTCATCGGCCGCAAAAATACACACTTGTCACGTGTGCGACTCATCATTTGATAGGATAAATCATTTGACAAGACATATGACTCTACATAGGGCCGTACTAACTCACAAATGTGATCGTTGCGATAAAGCATTTGCCAGCGAAGAGCATTTAACGAAGCACAATGACGAAGATCATGTAGACAAGCCTTATATCTGTACTGTTTGTAACAGAAATTTTGTGAGAGGCGAACATCTTATAAGACATTTGCGGGTGCATGAAACTGGAGCTGACGTGAGCGTTTTGAGGTGTTCAATATGTGAAAAAGTGTTCGATAGTTCTGACCATCTTGCACGCCATACGAAAGTTCACTTGCAACAAGACAAACGCCACGTATGTTCCGAATGCGGAAAGGCTTTCAACCGCCTCGACAATCTAAAAACTCATCAGCGTATTCATTCTGGTGTAAAAGACAACTCTAAACTTCACCTATGTATTTATTGTGGCAAGGAATTCAATAATTCCAGCAACATGATCGTGCATATGAGAAGACATACCGGGGAACGGCCTTACAAATGCAGCCAATGTGGAAAGGGTTTTCCTCGTTCCCATGACCTCAAATGCCACGAAAGAACCCACTCAGGAGAGAAACCATACTTGTGCACATTATGTGGAAAATCGTTtaacaaaagtaacaaattGttgAGACATTCAAGGGTACATACAGGTGAACGTCCATATGTGTGCAATTTATGCGGTCGGGCGTTCACTCAGTCGAACGATCTCGCACTACACATGCGTAGACATACGGGTTCCCGTCCGTATGCGTGCGGTGTTTGTCCTGCTCGGTTTATTCAATCGGGACAGTTAAAGAATCACCGGCGTACTACCGGTCATTGGATGGAAACGCAGCCTGAATTAAAAGGTGGACATCGTGTAGAACCAGTCACTCCAGTGACTAAACCGGCGCCGATAAAGTTTAAAACTCATGGCAAAAATAATACTgtcgaaaaaattgaaaaagaagatCTGGAATCAGAGGAACCACGCATAATGAGCCATACCGTTGGTATCATGGGCAATTTGAGCATCCAAACGAACAATCAGCCGATTCTTATCGACAGTAGTAAATTGTTGGGACATTTTCCTGGCTTAGTAAGTTTAGTTAATGTACaacaaaacattgaaaaagCTGATAATTCAGAATCAAATTCGATGGAACTAAAGTGTAAACCAGAAGTTCAAACTTTTGTAATTTCTGGCAAAGAAGAAAATGAAGAAATTAATGAAgaggataataaaaataaagaagtgGTGGGTACATTTCCAACCAATTCGGTGTTCACCTCTGTAACAGATACCACGGTTACATTCACCACGTCCGAAAGTTACAGCTACCAAAGCTACAGGTAG
- Protein Sequence
- MMIMKNCDADMEKVCRSCMSVSSEMRSVFDKDASNGEALQLSDMIMICAEVQIEEDDGLPSHLCSECEVKLQTAFTFKKQCEKSDATFRALSPETLAKVVIKQECLDNLDIVEQPDINNDSTTYDDNNFSDSSCGNQKKVAKRDSKQDKTDLTCNYCYKVLRTKKGLKIHMRRHTGEKLRTCDICSASFTKTDHLVRHMRVHNLEENQKYICVECGSEFSKSHQLSKHKKEHTTAKNQEEFNDEDEQNMSNNIYSDHESDESVKVTMSKERRRAKLEQLKKKKVMECEFCDRKFKYRKSFTHHIQLEHGMSDDNDIPLTSVISKNMQTKVSLDKEEDEEEEESSSKVVDESNADASSNNELMDLMFASSAAKIHTCHVCDSSFDRINHLTRHMTLHRAVLTHKCDRCDKAFASEEHLTKHNDEDHVDKPYICTVCNRNFVRGEHLIRHLRVHETGADVSVLRCSICEKVFDSSDHLARHTKVHLQQDKRHVCSECGKAFNRLDNLKTHQRIHSGVKDNSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKNHRRTTGHWMETQPELKGGHRVEPVTPVTKPAPIKFKTHGKNNTVEKIEKEDLESEEPRIMSHTVGIMGNLSIQTNNQPILIDSSKLLGHFPGLVSLVNVQQNIEKADNSESNSMELKCKPEVQTFVISGKEENEEINEEDNKNKEVVGTFPTNSVFTSVTDTTVTFTTSESYSYQSYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031275;
- 90% Identity
- iTF_00032228;
- 80% Identity
- -