Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998123.1:31094927-31096480[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.4e-07 9.5e-06 26.1 0.4 1 23 82 104 82 104 0.98

2 15 5.6e-05 0.0039 17.8 4.9 1 23 110 132 110 132 0.98

3 15 2.8e-05 0.002 18.7 5.9 1 23 138 160 138 160 0.99

4 15 3.5e-07 2.4e-05 24.8 3.4 1 23 166 188 166 188 0.98

5 15 0.0004 0.028 15.1 5.7 1 23 194 216 194 216 0.98

6 15 2.7e-06 0.00019 22.0 0.2 1 23 222 244 222 244 0.98

7 15 9.2e-06 0.00065 20.3 3.0 1 23 250 272 250 272 0.98

8 15 1.4e-05 0.001 19.7 0.8 1 23 278 300 278 300 0.98

9 15 0.013 0.92 10.4 1.2 1 23 306 328 306 328 0.97

10 15 1.1e-05 0.00078 20.0 1.3 1 23 334 356 334 356 0.98

11 15 6.8e-05 0.0048 17.6 2.9 1 23 362 384 362 384 0.97

12 15 2.5e-07 1.7e-05 25.2 0.2 1 23 390 412 390 412 0.98

13 15 0.13 9 7.2 6.2 1 23 418 440 418 440 0.95

14 15 6e-06 0.00042 20.9 1.0 1 23 446 468 446 468 0.98

15 15 0.00011 0.0077 16.9 6.1 1 23 474 497 474 497 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.4e-07	9.5e-06	26.1	0.4	1	23	82	104	82	104	0.98
2	15	5.6e-05	0.0039	17.8	4.9	1	23	110	132	110	132	0.98
3	15	2.8e-05	0.002	18.7	5.9	1	23	138	160	138	160	0.99
4	15	3.5e-07	2.4e-05	24.8	3.4	1	23	166	188	166	188	0.98
5	15	0.0004	0.028	15.1	5.7	1	23	194	216	194	216	0.98
6	15	2.7e-06	0.00019	22.0	0.2	1	23	222	244	222	244	0.98
7	15	9.2e-06	0.00065	20.3	3.0	1	23	250	272	250	272	0.98
8	15	1.4e-05	0.001	19.7	0.8	1	23	278	300	278	300	0.98
9	15	0.013	0.92	10.4	1.2	1	23	306	328	306	328	0.97
10	15	1.1e-05	0.00078	20.0	1.3	1	23	334	356	334	356	0.98
11	15	6.8e-05	0.0048	17.6	2.9	1	23	362	384	362	384	0.97
12	15	2.5e-07	1.7e-05	25.2	0.2	1	23	390	412	390	412	0.98
13	15	0.13	9	7.2	6.2	1	23	418	440	418	440	0.95
14	15	6e-06	0.00042	20.9	1.0	1	23	446	468	446	468	0.98
15	15	0.00011	0.0077	16.9	6.1	1	23	474	497	474	497	0.97

Sequence Information

Coding Sequence: ATGGATTCAAATAACTGTTTAGATCAAGAAATAATAGTCGAAGATAGCAAAGAATTAGTAAAGGTGAAAGAGGAATTGCCTTCTACTGTAAATGACGAGTTTGAGACAAATTATTATATGGGGGAAACACAAAACGATATAAAAGAGAAACTTGAACGTTTACCTATTGAAGAATCAAGTGAATGTGTAGCTAACAGTGCAAGTGAGgagaaacaaaaaagtaaaacagaaTCGACGTTACATTACGTGTGTGATGTTTGTGGTAAGAAATTTACTAGAAAGCCTAATTTATTGATTCACAAAAGAATTCACACTGGGGAAAAGCCATACTCATGCACTGATTGTCAAAAATTGTTTGCGagaaaagaacatttagatCATCATAGGAGAGTTCATACTGGAGAAAAACCCTATTCGTGTAATACTTgtggaaaattatttaaaagaaaataccaTTTGGACACACATTTTCGAACTCACACTGGAGAAAAGCCATACTCCTGTACTGATTgtcaaaaagttttttcaagaaaagaacatttaaacaaTCATAGCAGAGTTCATACTGGAGAAAAGCCGTATCCCTGTAAGACTTgtggaaaattatttaaaagaaagtgCCATTTGGACATCCATTTTAGAATTCACACTGGTGAAAAATCTTATGTATGCAATATTTGTAATAGAGGCTTTACCCAGAGCCAAGGTTTAAATAACCATTTGTTGATTCACACTGGTGAAAAGAACTTTTCTTGTGAAATTTGCAAAAAAGTCTTTACATTAAGAAATCATTTGACATTGCATCTTCAAACTCATTCTAAAGAAAAACCATTTTCTTGTAACATTTGTAATAAGGGATTTATTAGGAGGGAAAGATTGAAGGAGCATCTATTATCCCATGGTGATAATAAGCCATTTTCCTGTGACATATGTGAAAAAAAGTTCTTAAAAAAAGAATATGTACAATTACATCTTAAACTTCATGGTGAGAAAAAACCATTTGTTTGTCATGTTTGTCAGAAAGCATTTGTAAGAAGAAGTATATTGAACAACCACCTCCGTATCCATTTTCttgaaaagaaatatatttgtgaaatttgCCAAAAAGAGTTTATTCACAAACAAAATTTAGATTCCCACATGCACCTTCATTCTGACAAAAAGCCGTTTTCATGTGAAGTATGTGGAAAGGGATTTACCCGGAAGGATAATTTTGCTGCCCACTTACTCATACATACAGGGGAAAGACCCCACACATGTCCAGTTTGTCGAAAGCAGTTTACAAGGAGACACATTTTAAATTTCCATCTGAGAAAACACACAGGAGAAAAACCTTTTGTTTGTACCATTTGTAAAAAAGCTTTTGCCCTAAAACAAACATTAACAATTCATTATAGGACACATTCTGGAGAAAAACGGTTTTCTTGTCATATATGCAGTAAAGAATACAGCAGAAAATGTTATTTAGAAAATCATATAAAGAAACTTCATAAGGGAGAGGCTGATAACATTGGTATAAAAACAGAATGTAGTAcagatttaaatatttcttaa
Protein Sequence: MDSNNCLDQEIIVEDSKELVKVKEELPSTVNDEFETNYYMGETQNDIKEKLERLPIEESSECVANSASEEKQKSKTESTLHYVCDVCGKKFTRKPNLLIHKRIHTGEKPYSCTDCQKLFARKEHLDHHRRVHTGEKPYSCNTCGKLFKRKYHLDTHFRTHTGEKPYSCTDCQKVFSRKEHLNNHSRVHTGEKPYPCKTCGKLFKRKCHLDIHFRIHTGEKSYVCNICNRGFTQSQGLNNHLLIHTGEKNFSCEICKKVFTLRNHLTLHLQTHSKEKPFSCNICNKGFIRRERLKEHLLSHGDNKPFSCDICEKKFLKKEYVQLHLKLHGEKKPFVCHVCQKAFVRRSILNNHLRIHFLEKKYICEICQKEFIHKQNLDSHMHLHSDKKPFSCEVCGKGFTRKDNFAAHLLIHTGERPHTCPVCRKQFTRRHILNFHLRKHTGEKPFVCTICKKAFALKQTLTIHYRTHSGEKRFSCHICSKEYSRKCYLENHIKKLHKGEADNIGIKTECSTDLNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -