Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998120.1:26845884-26849962[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.001 0.07 13.9 0.6 1 23 168 190 168 190 0.98

2 16 0.00023 0.016 15.9 1.5 1 23 196 218 196 218 0.98

3 16 7.7e-05 0.0054 17.4 0.0 1 23 224 246 224 246 0.98

4 16 0.0006 0.042 14.6 4.6 1 22 278 299 278 299 0.96

5 16 6.5e-05 0.0045 17.6 2.0 1 23 306 328 306 328 0.97

6 16 2.3e-05 0.0016 19.0 0.5 2 23 335 356 334 356 0.98

7 16 0.025 1.8 9.5 7.9 1 23 362 384 362 384 0.99

8 16 0.00046 0.032 15.0 0.4 1 23 390 412 390 412 0.97

9 16 3.5e-06 0.00025 21.6 0.9 1 23 418 440 418 440 0.98

10 16 1.4e-06 9.7e-05 22.9 5.3 1 23 446 468 446 468 0.99

11 16 2e-07 1.4e-05 25.5 1.3 1 23 474 496 474 496 0.98

12 16 1.4e-05 0.001 19.7 3.2 1 23 503 525 503 525 0.97

13 16 3e-07 2.1e-05 25.0 0.5 1 23 531 553 531 553 0.97

14 16 3e-06 0.00021 21.8 2.1 1 23 559 581 559 581 0.98

15 16 2.3e-06 0.00016 22.2 3.1 1 23 587 609 587 609 0.99

16 16 0.00015 0.01 16.5 0.9 1 22 615 636 615 639 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.001	0.07	13.9	0.6	1	23	168	190	168	190	0.98
2	16	0.00023	0.016	15.9	1.5	1	23	196	218	196	218	0.98
3	16	7.7e-05	0.0054	17.4	0.0	1	23	224	246	224	246	0.98
4	16	0.0006	0.042	14.6	4.6	1	22	278	299	278	299	0.96
5	16	6.5e-05	0.0045	17.6	2.0	1	23	306	328	306	328	0.97
6	16	2.3e-05	0.0016	19.0	0.5	2	23	335	356	334	356	0.98
7	16	0.025	1.8	9.5	7.9	1	23	362	384	362	384	0.99
8	16	0.00046	0.032	15.0	0.4	1	23	390	412	390	412	0.97
9	16	3.5e-06	0.00025	21.6	0.9	1	23	418	440	418	440	0.98
10	16	1.4e-06	9.7e-05	22.9	5.3	1	23	446	468	446	468	0.99
11	16	2e-07	1.4e-05	25.5	1.3	1	23	474	496	474	496	0.98
12	16	1.4e-05	0.001	19.7	3.2	1	23	503	525	503	525	0.97
13	16	3e-07	2.1e-05	25.0	0.5	1	23	531	553	531	553	0.97
14	16	3e-06	0.00021	21.8	2.1	1	23	559	581	559	581	0.98
15	16	2.3e-06	0.00016	22.2	3.1	1	23	587	609	587	609	0.99
16	16	0.00015	0.01	16.5	0.9	1	22	615	636	615	639	0.90

Sequence Information

Coding Sequence: ATGTCTTTACGAGTTCAAACATCCAACTTAACAGTGAAAAGTGAATTACTACAAGATAATTACAATTCTGACCAAACATGGGGCTTTTCTGATAAAGATGATAATTGGGAACATCAAcctttaaatttagttaatgttAAAGAAGAAACTATACTAGAAGATGAATCAGAAGACAATGTTTTTGAAGATGAAACCAAGTTTATTGATAGAACTTGGCATTTTTCTCATAAGGAGGGTAATGGAAATAATGAGCTTTCAAATTTAGATAACGTGAAACaagaaattattctaaaaaagGAAGTGGAAGGTAATGTTTTTGTAAATGAAATCAGGCTTATTGATGAAACCTGGCATTTCTCTGATAATGAAAGTAATAGAAAAAATGAGCTTTTAAATTTAgatgatataaaaaaagagACTAATTTTGAAGAAGAAATCAACCttaatataagtaattttaCTACAGACTTAACTAATTCTACTTCTGTTCAATCAAGgcaatttaaatgtaaatattgtcCAGAAGTTTGTGTGTCCAGACTAGATCTAGATAACCATCTGGAAGTTCATAGCGAAAGGGATATGTATAATTGTAAGGTCTGTGAAGAAAGCTTTTCTTCTCAAGGTGACTATGATCATCACAGTAGAATTCATACAGGTAAAAAGCTATATGAATGTGAACAGTGTGGTGAAGGTTTCGATCAGAAATCTAGATTAGATATACATATTTTGGTCCATGAAAGACCATTTATGTGTGAAGTATCTAATAAACCGTTTACACAAAAAGCTATTCTGAAAACTCACCGAAAGATACAGCCTGCAATAAAAGCTCATAAGTGTAAAGAGTGTGGCAAAATCTTTCATAagaaatttacattatttaccCATTTACGTAGTCGTAGCAGTGCCAGGCCTTTTATGTGTAAATGGTGTTTGCGGACATTTTCAAGAAGctGGCTATTGAAAACCCATTTGAAACAACACACGGAAGATAAATCTCAAAAATGTGATATTTGTGGCAAAAACTTCTTTGGGAAATATACTCTTGCAGTTCATAGACGTATACATGCAAAAATGAATACCTATAAATGTGAATATTGTGATAGGCATTTTAgatgcaaaaattattttgaaattcacTTGAAGTCTCATACAGGAGGTAGCATCTTCAAGTGCAACATATGTGGaaagaaatttttattacaGGCAGCTTTGGATAAACACATTACTAGCCATTCGAATGAAAAATCTTTCCAATGTGCCGTGTGCCAAAAAAGTTTTACCAATAAAAATCAGCTCCGTGGTCATGTTAAAATTCACACCGATCTTAAACCTTTTAAGTGTACAATATGTGATAAATCTTTTGCCCACAAGAAATATTTGAACACCCACTACCAAACGCACGCTaaagaaaagaattttaaatgtGAGATTTGTGGTAAATGTTTTACCAGAAAtatttacttggtgaaacatattgcAATACACCAGGGAACCAAGGAGAAGTTTGAGTGTAATATTTGTCATAAGACTGTTACTAGCAAACAAAACTTGAAAAAACATTCAGCAACACACAAGGGAGAAAAGCCATTCAAGTGCGAAATCTGTGGGCAGAGATTTACTCGAAACGGTGGTTTGACACGTCACCAAATATTGCATACTGGTGAACGTCCATTTGAATGCCAATTTTGCGGTAAACATTTTGTTACTAAAGGTGATATGACCAGACACGTTCGCATCCATACTGGGGAAAAACCATATGAGTGTCAAGTGTGTCAGAAAAGATTTTCCGAAAAACAACATCTCGATCGACATATGCGCATTCATACGGGGGAAAAGCCATACGATTGTAAAATTTGTTTGCAAAGATTTACGCAAATATCTTCTTTGAAAAGGCACATTTCTATTAAGCAGCATCATGAAAGTTCCGATGTAGTTATCTAg
Protein Sequence: MSLRVQTSNLTVKSELLQDNYNSDQTWGFSDKDDNWEHQPLNLVNVKEETILEDESEDNVFEDETKFIDRTWHFSHKEGNGNNELSNLDNVKQEIILKKEVEGNVFVNEIRLIDETWHFSDNESNRKNELLNLDDIKKETNFEEEINLNISNFTTDLTNSTSVQSRQFKCKYCPEVCVSRLDLDNHLEVHSERDMYNCKVCEESFSSQGDYDHHSRIHTGKKLYECEQCGEGFDQKSRLDIHILVHERPFMCEVSNKPFTQKAILKTHRKIQPAIKAHKCKECGKIFHKKFTLFTHLRSRSSARPFMCKWCLRTFSRSWLLKTHLKQHTEDKSQKCDICGKNFFGKYTLAVHRRIHAKMNTYKCEYCDRHFRCKNYFEIHLKSHTGGSIFKCNICGKKFLLQAALDKHITSHSNEKSFQCAVCQKSFTNKNQLRGHVKIHTDLKPFKCTICDKSFAHKKYLNTHYQTHAKEKNFKCEICGKCFTRNIYLVKHIAIHQGTKEKFECNICHKTVTSKQNLKKHSATHKGEKPFKCEICGQRFTRNGGLTRHQILHTGERPFECQFCGKHFVTKGDMTRHVRIHTGEKPYECQVCQKRFSEKQHLDRHMRIHTGEKPYDCKICLQRFTQISSLKRHISIKQHHESSDVVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -