Abig013722.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Agrilus biguttatus
Gene Symbol
-
Assembly
GCA_963921985.1
Location
OY998123.1:28864068-28871777[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 4.2 2.9e+02 2.5 0.5 2 21 77 96 76 97 0.91
2 41 0.0089 0.62 10.9 0.2 3 23 154 175 153 175 0.90
3 41 0.01 0.73 10.7 0.2 1 23 179 201 179 201 0.98
4 41 5.4 3.8e+02 2.1 1.1 1 23 207 230 207 230 0.74
5 41 0.0014 0.096 13.4 4.2 1 23 236 258 236 258 0.94
6 41 0.00072 0.05 14.3 1.8 1 23 264 287 264 287 0.97
7 41 0.00034 0.024 15.4 2.8 2 23 296 318 295 318 0.96
8 41 0.00014 0.0095 16.6 2.0 2 23 324 345 323 345 0.96
9 41 9.5e-06 0.00066 20.2 1.4 1 23 351 373 351 373 0.98
10 41 9.4e-05 0.0065 17.1 3.3 1 23 379 401 379 401 0.98
11 41 1.7e-05 0.0012 19.5 0.3 1 22 407 428 407 428 0.97
12 41 0.049 3.4 8.6 0.2 1 23 600 623 600 623 0.94
13 41 0.22 15 6.5 0.3 1 23 627 649 627 649 0.98
14 41 1.9 1.3e+02 3.5 0.2 2 23 656 678 655 678 0.90
15 41 0.0079 0.55 11.1 6.7 1 23 684 706 684 706 0.94
16 41 0.0019 0.13 13.0 0.7 1 23 712 735 712 735 0.93
17 41 0.13 9.4 7.2 0.2 2 23 744 766 743 766 0.95
18 41 0.00032 0.022 15.4 0.1 1 23 771 793 771 793 0.97
19 41 3.9e-06 0.00027 21.5 2.1 1 23 799 821 799 821 0.98
20 41 1.4e-05 0.00098 19.7 1.1 1 23 827 849 827 849 0.96
21 41 0.2 14 6.6 0.3 1 12 855 866 855 868 0.91
22 41 0.95 66 4.5 3.3 1 20 934 953 934 955 0.95
23 41 0.0037 0.26 12.1 0.2 2 23 1011 1033 1010 1033 0.92
24 41 0.0049 0.34 11.7 0.1 1 23 1037 1059 1037 1059 0.99
25 41 6.7 4.7e+02 1.8 2.8 1 23 1066 1089 1066 1089 0.93
26 41 0.00011 0.0075 16.9 3.8 1 23 1095 1117 1095 1117 0.97
27 41 0.0026 0.18 12.6 3.9 1 23 1123 1146 1123 1146 0.94
28 41 0.24 17 6.4 1.8 2 23 1155 1177 1154 1177 0.96
29 41 0.0016 0.11 13.2 0.3 1 23 1182 1204 1182 1204 0.92
30 41 0.2 14 6.6 2.0 3 23 1212 1232 1210 1232 0.92
31 41 1.4e-06 0.0001 22.8 0.5 1 23 1238 1260 1238 1260 0.99
32 41 0.0067 0.47 11.3 0.0 3 23 1405 1426 1404 1426 0.94
33 41 1.5 1.1e+02 3.9 1.5 1 23 1430 1452 1430 1452 0.91
34 41 0.15 11 7.0 0.3 1 23 1458 1480 1458 1480 0.97
35 41 3.3 2.3e+02 2.8 5.9 1 21 1486 1506 1486 1509 0.77
36 41 0.0017 0.12 13.1 3.5 2 23 1516 1537 1515 1537 0.92
37 41 0.00078 0.055 14.2 0.5 2 23 1546 1567 1545 1567 0.96
38 41 0.00022 0.015 16.0 0.9 1 23 1573 1595 1573 1595 0.98
39 41 0.0064 0.45 11.3 1.6 1 23 1601 1623 1601 1623 0.98
40 41 3.2e-05 0.0023 18.6 1.1 1 23 1629 1651 1629 1651 0.99
41 41 0.09 6.3 7.7 2.6 1 21 1657 1677 1657 1678 0.95

Sequence Information

Coding Sequence
ATGACGCACGCTATTTTCAGGACTGAAACAGACGACGACGATGAAGAATttgttataaatagaaaaacaacTACAAGACGTCGAAAAATTGCGAAAGGTAGATCGTTAAAAAAGGCAGCACTCAAAGGGAAAAAGGCGAAAACTCAGAAAAACAAAGCCGATCCTATCGAAATCATTACCATTAAGAAAGAACAAGGAATTGAAAATATTGATAAGAACAAGAccataaaatgtaaatactgCAATAACATTTACTTAAACGAAAAATGGTTTCGTTATCACATGATGCGAGAAGAGCAACTGTATTATTGTCACGAGTGCGAGCATTTGGAAAAGTTGACCAAATTTGAACTTATTGAACATTGTAAAGTGCATGGGATTGACTATAAAAGTTCCAAGAACTTTTTTCGTCGAGCCAAATCGAAAAGACCGCGCATTAAACGACCCGAACGTTCGTTTTGTGAAATATGTTCCGCGGAATTCGATACGAAAGACGAACTGGAAAAACATTACGACGACTCCCACGAGAATCATTACGTGTGCGAAGTTTGTAACGCGGGTTTTAAGAAAATCGTCGATTACACCCTACACATGTACTCGCATAGCGAAGACAATCTCTTTAAATGCCCCCTGTGCCATTTCACTTCGACCAAAGGTTACATAATCAAGGCTCATCTTCAATCGGTTCACGAACAATTCAAAAAGTACAAGTGCGAACTTTGCGGCAAAGGTTTCTCAACTTACACCCACTTTGAAGAACACAAGTACTTTCATAGCGGCGAGAGACCTTTCCAATGCGACATATGCGGCGCCAAGTTTATGTACTCGAGATATTTAAACTCCCACAAACGATACCAACATCAGTACGCCAAAGATGAGGAACTCAAGTGTTCGGTGTGTGGAAAAATATGCACGACCACCCGGTCGTTGAGTAACCATCAGCGCGTGAGACATCCAAAGGACTTGCTCATATGTCATTTTTGTGGCAAAACGTTTCGAGGAAAGCAAAATCTTCTGTTACATTCGCGAATTCACACGGGCGAAAAGGCGTACACCTGTTCTTATTGCGGTAAGAAATTTAGCCGAAGAGGTTACATGTTAGAACACGAGAGGATTCATACCGGAGACAAACCGTTCAAGTGTCCCCATTGTAACAAAGGTTTCTCGCAACGCACCAGTATGGTCATTCATTCTAGAAAACATACGGGTGAAAGGCCCTACGTGTGTCATATTTGTGGGAAGGGTTACGCATCGAGAAACATGCTAACAAATCACTTAAGGACTTGCAAGGCGTTTTCTTTCAGGGTCACTTATAACCAACGACAAACAATTACGGTTTCGTATGGTTCGAACAGAGAAAGTAGGAAAAGGAATGCTAAATGTCTAAGAACCGgcaataataatgttaataaagaaaaactgtTGACTTCAAACGGAAAAAGGAACATTGTCGATAAAAAGCCTCGGTCATCTGCAAAAGAACAAACAAAATCAGAGTACGTTCAATGTAATGCCTCAAAGGAAACAATTCTtaaagaagaagaggaagaggaaCCAAATAAAAGATACACATGCAGATTCTGTCGTAATGTTTATAATGACAAAACAACGTATCGATTTCATATGAATCAAGAAGAGAAAGTCTATTTCTGTCATCAATGCGGAAACCGCGAAAAATTGACAAAACACGAGCTACTGGAACATTGCAAATTGCACGGAATTGATCACAAGAAAAAAGCAAAATTCTTTCGAAAAGCGCAAGCTAAAAATCCGCGACCACGCGCCCCATTACAATTATTCCTCTGCGAAATATGCTCTTTGGAATTTAGTGCAAAAACAGATCTCGACACGCATTACGAAACCGACCACAAGAATCATTATAAATGCGAAATATGCGAGACAGGTTCCAATAATCTCGTCGACTACATCTTTCACATGCAAACGCACAACGAAGACAAATCGTTAAAGTGCCCGCTCTGCACATTCTCCACCTCTAGCAGGTACGTGATCAAAGGTCACCTAGCGTCAGTTCACGAACAATTCAGGAAACACAAGTGCAAAACATGCGGCAAACGATTCTCCGTATATTCACATTTCGAGGAACATAACAACTTTCACACTGGTGAAAAGCCGTTTCAGTGCGATGCATGTGGCAAGAAATTTATGTACTCGAGATATTTAAGATCGCACGTAGCTCTCATGCACACGGAATGTTCGGAAAACGAACTCAAGTGTTCACTGTGCGATCAAACGTTTCTTGCAGCGGGCGCACTTATAGAACACAGGCGCAGAAAACATTCCAAGTTCGTGCATGTCTGCGAAGTGTGCGGAAAAACGTTTAGGGAACGTCTCGGACTCGCAGCGCATGCGAAAATTCATTCGGAAATTAAATCGTACGTGTGTTCTGTCTGCAAAAGACGTTTCTCAAGGAGGTCGTATTTGACTCAGCACGAACGTATTCATACCGGTGAGAAACCGCACGTGTGTCCACATTGCGGCAAGGGATTCACGCAACGCAGCAGTATGGTCATACATGCGAGAGGACACACTGGAGAACGCCCATACGTTTGCCAATTGTGTGATAAAAGGTTTACGTCTGGAAATAGGGGATCATATAAATCAGAAAATCCGATAGTCGTGTATATTAAGGAAGAGATAAAGCAAACTGAAACTGATGATAATTTCTATTTAAAGTTTAACAACAAAAAAGGTCAACATACTCCTCAACCTAAACGAAAAATTGCAACGAATAAAAGACTGATAAAAATTGAAGGTAGAAATTTGTATAACGTCAAGACGTTCACTTGCAAACATTGTAAAGTCATTTACAATGATATAAAGACTTACCAGTACCACATGACTCATGAAGAAAGTCTGTACTATTGTCACCACTGTAAGGATTCAAAACGAATAACGAAACAGGAACTAATCGATCATTGTAATCTATTTGGAATTTCGTtcaatcaaccgaaattctttCGAAAAGCACGAGTCAAAAAGCCACGATCTCCACATATAAATAGCGGACTATCATGTGAAATATGCGATCGAGATTTTAACATGAAGAAATCATTAGAAGAACATTATTCAGAAGCGCACAAGGATCACTACAAATGTGAGATGTGTGACGCAGGTTTCAAAAAGcttcttgaatatgttattcACATAAAAGTTCACAGTAGCGGTCATGACACATTCAATTGTGCACTTTGTCAATATTCAACTCAAAAGAGTTGTTTATTCAAAATACATCTACAGGCCAATCAtgacaaattcaaaaaatacaattgcGACATATGTAACAAGAAATTCTCTGTTCATTCTCAGTTCCAAGAACACATGAATTTTCATACTGGCGATAAGCCGTTTCAATGTGATTTCTGCGGCAAAAAATTTATGTATTCGAAGTACCTTTCTTCGCACATTGCACATTTTCACAAAGTGCGATCCAAAGAGGAGCTAATGTGTACCATTTGCAATACACAATGTGCCTCTGTTGTAACTCTTATGGATCATAAACGCAGAAAACACCCGAAGGCCTTACACGTTTGCGAGGTGTGCGGCAAGACGTTTAATGAGAAAATTGGACTTACGCTCCACTCCGTGGTTCATTCTAAAGAGAGACTTTACGGATGCTCCTTTTGTCCAAAGAAATTCAGCAGGAAATATTGCGTTCCAGAACACGAGCGAATTCATACGGGTGTCAAACCCTTTAAATGTCCGGAATGCGGTGAGGGGTTTACTCAGAGGGGAACGATGAAAATACACCAGAGAAAACACACTGGCGAACGGCCATACGTTTGTCACATGAATTCAGAAAGTGAAAACTCGGATAGTAGATGTAATGTTCCTATAGAGGTTAAAAGCGAATATGTTACTGAAGCAGTATTTGTTAACGAAGTCGAAGATGATGGCCAATATGATAATGAATTGAGTGACGGTTTCCTATTTAGAAAAGGTAATAGCGGATTTTGGCATTGCAAGACTTGCCGTAACAAGAAATTTTATAATGAAGAGGCTCACGCCAAGCTCGTGGTGGCCAAAGAAGTGAAAAAGTTCTATTGTCATTACCATCCTACTTGTACTGAATTGTTCACGAAACACGAATTAGTTAAACACTGTGAAGACCATGGCGTCGAAATTGAAAATCATCAGAAGTTTTTCGAAAGAGCGAAAAGTAAAACTGTTCGACTTAAGTTTCCTGATGAACCGTGTGAAATTTGTTCTGAGATCTTTCCGAACAAAAATGCTTTAGAAATTCATTACGATAAAGACCACGAAAATCAGTATACTTGTGAAATTTGCAAAGCAGGATTCAAAAAAATCATCGACTACATTTGTCATCTACAAAGACATCGCGAGGATAATTTATTTGCCTGTCCTTTGTGCGAAGTAACAACCGAGAAATTCTACCAGATCAGGGTACACATTAAGAAACACGAACAGTTTCGGAAATTCAAGTGTAAGATTTGCGAGAAAAGATTCTCGTGTTACTCGTCCCATTTGGAGCACATGAAGTTTGTCCACCATGGACAGAAACCTTGCGTCTGCGACGTTTGTGGGAAGAGATTTAGAAACGAGGGTTGTCTGACAACGCACAAGGACGAACATATGTGGAAAATCAACGGCGGGATGGAATGCGAACAATGTAAAACAATATTTCCGACATATCGTTCATTGAGACGCCATTTGGCTTCCCATTCCCCCAAAGAGATGTTCGTATGTGACGTTTGCGGAATGAATTTTTTACACAAGGGCAGCCTGGTTAGGCACATGAAAAGTCACAACGGTGATAAGCAGTTTAAGTGCTCGTTTTGTGAGAAAAGGTTCATCACGAGCACGACCCGAGCGGAACACGAAAGAATTCACACGGGGGATAAACCGTTCAAGTGTCCCTTTTGTAATAAGGGTTTCACCCAACGAAGCGGTATGGTCATACATTCCAGAACGCACACTGGCGAAAGACCCTACATTTGCCACCTGTGCAATCGGGGGTATACGTGTAAGGCCACATTACGCAGTCATATGAACAATTGTAAGGGTTGCGATATTACAGATTAA
Protein Sequence
MTHAIFRTETDDDDEEFVINRKTTTRRRKIAKGRSLKKAALKGKKAKTQKNKADPIEIITIKKEQGIENIDKNKTIKCKYCNNIYLNEKWFRYHMMREEQLYYCHECEHLEKLTKFELIEHCKVHGIDYKSSKNFFRRAKSKRPRIKRPERSFCEICSAEFDTKDELEKHYDDSHENHYVCEVCNAGFKKIVDYTLHMYSHSEDNLFKCPLCHFTSTKGYIIKAHLQSVHEQFKKYKCELCGKGFSTYTHFEEHKYFHSGERPFQCDICGAKFMYSRYLNSHKRYQHQYAKDEELKCSVCGKICTTTRSLSNHQRVRHPKDLLICHFCGKTFRGKQNLLLHSRIHTGEKAYTCSYCGKKFSRRGYMLEHERIHTGDKPFKCPHCNKGFSQRTSMVIHSRKHTGERPYVCHICGKGYASRNMLTNHLRTCKAFSFRVTYNQRQTITVSYGSNRESRKRNAKCLRTGNNNVNKEKLLTSNGKRNIVDKKPRSSAKEQTKSEYVQCNASKETILKEEEEEEPNKRYTCRFCRNVYNDKTTYRFHMNQEEKVYFCHQCGNREKLTKHELLEHCKLHGIDHKKKAKFFRKAQAKNPRPRAPLQLFLCEICSLEFSAKTDLDTHYETDHKNHYKCEICETGSNNLVDYIFHMQTHNEDKSLKCPLCTFSTSSRYVIKGHLASVHEQFRKHKCKTCGKRFSVYSHFEEHNNFHTGEKPFQCDACGKKFMYSRYLRSHVALMHTECSENELKCSLCDQTFLAAGALIEHRRRKHSKFVHVCEVCGKTFRERLGLAAHAKIHSEIKSYVCSVCKRRFSRRSYLTQHERIHTGEKPHVCPHCGKGFTQRSSMVIHARGHTGERPYVCQLCDKRFTSGNRGSYKSENPIVVYIKEEIKQTETDDNFYLKFNNKKGQHTPQPKRKIATNKRLIKIEGRNLYNVKTFTCKHCKVIYNDIKTYQYHMTHEESLYYCHHCKDSKRITKQELIDHCNLFGISFNQPKFFRKARVKKPRSPHINSGLSCEICDRDFNMKKSLEEHYSEAHKDHYKCEMCDAGFKKLLEYVIHIKVHSSGHDTFNCALCQYSTQKSCLFKIHLQANHDKFKKYNCDICNKKFSVHSQFQEHMNFHTGDKPFQCDFCGKKFMYSKYLSSHIAHFHKVRSKEELMCTICNTQCASVVTLMDHKRRKHPKALHVCEVCGKTFNEKIGLTLHSVVHSKERLYGCSFCPKKFSRKYCVPEHERIHTGVKPFKCPECGEGFTQRGTMKIHQRKHTGERPYVCHMNSESENSDSRCNVPIEVKSEYVTEAVFVNEVEDDGQYDNELSDGFLFRKGNSGFWHCKTCRNKKFYNEEAHAKLVVAKEVKKFYCHYHPTCTELFTKHELVKHCEDHGVEIENHQKFFERAKSKTVRLKFPDEPCEICSEIFPNKNALEIHYDKDHENQYTCEICKAGFKKIIDYICHLQRHREDNLFACPLCEVTTEKFYQIRVHIKKHEQFRKFKCKICEKRFSCYSSHLEHMKFVHHGQKPCVCDVCGKRFRNEGCLTTHKDEHMWKINGGMECEQCKTIFPTYRSLRRHLASHSPKEMFVCDVCGMNFLHKGSLVRHMKSHNGDKQFKCSFCEKRFITSTTRAEHERIHTGDKPFKCPFCNKGFTQRSGMVIHSRTHTGERPYICHLCNRGYTCKATLRSHMNNCKGCDITD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-