Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998123.1:28889114-28892198[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00014 0.0096 16.6 1.3 2 23 16 38 15 38 0.90

2 18 4.4e-05 0.0031 18.2 1.6 1 23 46 68 46 68 0.98

3 18 3.6e-06 0.00025 21.6 1.2 1 23 74 97 74 97 0.96

4 18 1.1e-05 0.00078 20.0 0.6 1 23 102 124 102 124 0.98

5 18 0.00046 0.032 14.9 1.9 1 23 137 159 137 159 0.96

6 18 4.2e-05 0.0029 18.2 0.0 1 23 166 188 166 188 0.98

7 18 6.5e-06 0.00046 20.8 0.7 1 23 194 216 194 216 0.99

8 18 4e-05 0.0028 18.3 0.9 1 23 222 244 222 244 0.97

9 18 0.0009 0.063 14.0 2.3 2 23 263 284 262 284 0.96

10 18 0.044 3.1 8.7 3.7 1 23 290 312 290 312 0.97

11 18 0.00065 0.045 14.5 4.9 1 21 320 340 320 342 0.96

12 18 0.0095 0.66 10.8 1.2 1 23 348 371 348 371 0.97

13 18 4.2e-08 3e-06 27.6 0.6 1 23 376 398 376 398 0.99

14 18 0.0014 0.1 13.4 2.8 1 23 411 433 411 433 0.98

15 18 9.7e-06 0.00068 20.2 0.0 1 23 440 462 440 462 0.98

16 18 2.2e-06 0.00016 22.2 0.9 1 23 468 490 468 490 0.98

17 18 7.9e-06 0.00055 20.5 0.3 1 23 496 518 496 518 0.98

18 18 1.7e-05 0.0012 19.4 1.1 1 23 524 547 524 547 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00014	0.0096	16.6	1.3	2	23	16	38	15	38	0.90
2	18	4.4e-05	0.0031	18.2	1.6	1	23	46	68	46	68	0.98
3	18	3.6e-06	0.00025	21.6	1.2	1	23	74	97	74	97	0.96
4	18	1.1e-05	0.00078	20.0	0.6	1	23	102	124	102	124	0.98
5	18	0.00046	0.032	14.9	1.9	1	23	137	159	137	159	0.96
6	18	4.2e-05	0.0029	18.2	0.0	1	23	166	188	166	188	0.98
7	18	6.5e-06	0.00046	20.8	0.7	1	23	194	216	194	216	0.99
8	18	4e-05	0.0028	18.3	0.9	1	23	222	244	222	244	0.97
9	18	0.0009	0.063	14.0	2.3	2	23	263	284	262	284	0.96
10	18	0.044	3.1	8.7	3.7	1	23	290	312	290	312	0.97
11	18	0.00065	0.045	14.5	4.9	1	21	320	340	320	342	0.96
12	18	0.0095	0.66	10.8	1.2	1	23	348	371	348	371	0.97
13	18	4.2e-08	3e-06	27.6	0.6	1	23	376	398	376	398	0.99
14	18	0.0014	0.1	13.4	2.8	1	23	411	433	411	433	0.98
15	18	9.7e-06	0.00068	20.2	0.0	1	23	440	462	440	462	0.98
16	18	2.2e-06	0.00016	22.2	0.9	1	23	468	490	468	490	0.98
17	18	7.9e-06	0.00055	20.5	0.3	1	23	496	518	496	518	0.98
18	18	1.7e-05	0.0012	19.4	1.1	1	23	524	547	524	547	0.97

Sequence Information

Coding Sequence: ATGGTCTCTCCAAATAAACGATGTCGTAATAATGGTAAAAAGATCAAATGTAGTTACTGCGACAGGACATTTACAAGGCGGTATTATACACAAAAACATGAAGAAGAGGTCCATATGAAACCGTCGAACGTCGAATTTTCATGTAACGTGTGCGGAAAATCGTACAAACAGGAAAAATTCTTTATCGATCATTTGAATAGGCATCAGGTCGATAATTACCACTATTGTCCGAATTGCGGTAGAGGTTTTATTTCCAATAGTAAACTACAAAATCATATAGAGAGAACGCATACTGATGTGCTATACGAATGCGAGATGTGTGGAAAATTGTTAAAGAACAAGTTCACTTTGATTAAACATATGAACGTTCACAGAAATAAAAACGACAATGAGAACGATAGGAAAGCCTTTACGTGCCAGTTTTGTGAAAAAACTTACTTTACAAAAACGAGTTTGGTGCGACATGTCGAAGAACATTTGGGCAAAAAGCAAAGTTACGTTTGTGATATTTGTGGTAAAGCCGTGTCATCAATTGAAAGTTTAAGAGACCATTTACTGGTTCACAAGAACAATAAATCTTACGAATGTGTCGATTGCGGAAAACGGTTTAATACAAACAATATATTGAGAGCCCATAGAAGAACCCATATGGGACAGAAGAAGTTTATTTGTGAGGTTTGCGGTAAACGATTTATTCATAGGTCGCCGTTTGTTATTCACAAAAGAATTCATACTGGAGAAAAACCGGACAAGAAAGAGAAATCTCCGAAGGGCCAATCGGACAAACGATGCAGTATTTGTTTTAGGATTTTTTCCTTAAGGAAGAGTCTTAAGCGACATTTATTCGTACATAGTAAAGAGAAACCGTTCAAATGTAATTACTGCGAACGAGGGTTTATTACCGAATGTTATAAACGACTGCATGAAAAAATCCATACGAATCCTCCAGGTTTCAGATATTCGTGTAATTTATGCGACAAATCCTATAGACACGAACAAACACTTGTCAGTCACATGAGATGCCATCAGATGGATTATAGTTACTTTTGTCCTAATTGTTTTAGAGGATTTTTCTCGGATAGGGAATTAAAGTATCACGTAAAGATGATACACAGTGATGTTTTGTACCAGTGTGAAATTTGCGGCAAATCCTTAAAGAGCAAATCGAGTTTGAAAGTCCACATGGATACTCATTTAAGTAAAAGCGATAAGGAAAAAAATAGGAAATTGTTTGTATGTCATATTTGTCAAAAACCGTATCACTCCCAGCAAGGCATGAAAATCCACATTCAGCAGCATTTAGGTAATACGAAAAGTTATGTTTGCGACATTTGTGGTAAAGCTCTATCATCATCTGCTGGTTTAAAGGATCACATATTGATTCACGAGAACAGCAGATCGTACGAGTGCGTCGAGTGTGGAAAAcggtttaataaaaagaaaactttggTAGTGCATAGAAGAATTCATACGGGAGTTAAAAACTACGCATGTGATCTTTGCGATAAACGATTTACGCAAAGATCGCCGCTTGTTATTCATAAAAGAATTCATGCTGGAGAAAAACCATACAAATGCGATCTTTGTGAAAATGTGTTTATCAGCAGAAGTGATCTAAATCGTCACAAACGAAATCAGCATAAAATCGTTAACTGGACCACAAATAGTACCTAA
Protein Sequence: MVSPNKRCRNNGKKIKCSYCDRTFTRRYYTQKHEEEVHMKPSNVEFSCNVCGKSYKQEKFFIDHLNRHQVDNYHYCPNCGRGFISNSKLQNHIERTHTDVLYECEMCGKLLKNKFTLIKHMNVHRNKNDNENDRKAFTCQFCEKTYFTKTSLVRHVEEHLGKKQSYVCDICGKAVSSIESLRDHLLVHKNNKSYECVDCGKRFNTNNILRAHRRTHMGQKKFICEVCGKRFIHRSPFVIHKRIHTGEKPDKKEKSPKGQSDKRCSICFRIFSLRKSLKRHLFVHSKEKPFKCNYCERGFITECYKRLHEKIHTNPPGFRYSCNLCDKSYRHEQTLVSHMRCHQMDYSYFCPNCFRGFFSDRELKYHVKMIHSDVLYQCEICGKSLKSKSSLKVHMDTHLSKSDKEKNRKLFVCHICQKPYHSQQGMKIHIQQHLGNTKSYVCDICGKALSSSAGLKDHILIHENSRSYECVECGKRFNKKKTLVVHRRIHTGVKNYACDLCDKRFTQRSPLVIHKRIHAGEKPYKCDLCENVFISRSDLNRHKRNQHKIVNWTTNST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -