Abig013704.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus biguttatus
Gene Symbol
-
Assembly
GCA_963921985.1
Location
OY998123.1:28772849-28778218[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.37 26 5.8 2.4 2 23 42 63 41 63 0.97
2 40 8.1 5.7e+02 1.6 2.6 1 23 84 106 84 106 0.93
3 40 0.0069 0.48 11.2 0.5 1 23 110 132 110 132 0.98
4 40 8.8 6.1e+02 1.5 1.2 1 23 138 162 138 162 0.82
5 40 0.00063 0.044 14.5 2.8 1 23 168 190 168 190 0.97
6 40 0.00077 0.054 14.2 2.4 1 23 196 219 196 219 0.97
7 40 0.015 1.1 10.1 3.6 2 23 231 252 230 252 0.98
8 40 0.0007 0.049 14.4 1.4 3 23 267 287 265 287 0.96
9 40 2e-05 0.0014 19.2 0.6 1 23 293 315 293 315 0.97
10 40 2.6e-05 0.0018 18.9 0.3 1 23 321 343 321 343 0.97
11 40 0.00043 0.03 15.0 3.2 2 23 383 404 382 404 0.97
12 40 0.14 9.9 7.1 0.6 1 23 425 447 425 447 0.97
13 40 0.00063 0.044 14.5 2.0 1 23 451 473 451 473 0.98
14 40 2.2 1.6e+02 3.3 1.5 1 23 479 503 479 503 0.94
15 40 0.00035 0.025 15.3 0.8 1 23 509 531 509 531 0.98
16 40 0.00055 0.039 14.7 2.5 1 23 537 560 537 560 0.98
17 40 0.04 2.8 8.9 1.2 2 23 572 593 571 593 0.97
18 40 0.00015 0.011 16.5 0.4 3 23 609 629 607 629 0.96
19 40 2.8e-06 0.0002 21.9 1.2 1 23 635 657 635 657 0.98
20 40 0.0063 0.44 11.4 2.6 2 23 698 719 697 719 0.96
21 40 0.062 4.3 8.2 0.1 1 23 740 762 740 762 0.98
22 40 0.0086 0.6 10.9 0.3 1 23 766 788 766 788 0.97
23 40 1.1 77 4.3 0.8 1 23 794 818 794 818 0.94
24 40 0.00029 0.02 15.6 3.1 1 23 824 846 824 846 0.98
25 40 0.00092 0.064 14.0 1.1 1 23 852 875 852 875 0.96
26 40 0.0014 0.1 13.4 2.8 2 23 887 908 886 908 0.98
27 40 7.4e-05 0.0051 17.4 0.6 3 23 922 942 920 942 0.95
28 40 6.5e-05 0.0045 17.6 1.1 1 23 948 970 948 970 0.98
29 40 4.5e-05 0.0032 18.1 0.6 1 23 976 998 976 998 0.98
30 40 0.00023 0.016 15.9 0.9 2 23 1081 1102 1080 1102 0.97
31 40 0.13 8.8 7.3 2.1 1 23 1123 1145 1123 1145 0.97
32 40 0.0012 0.082 13.7 0.3 1 23 1149 1171 1149 1171 0.97
33 40 1.1 79 4.3 2.4 1 23 1177 1201 1177 1201 0.96
34 40 0.0007 0.049 14.4 2.5 1 23 1207 1229 1207 1229 0.97
35 40 0.094 6.6 7.7 0.9 1 23 1235 1258 1235 1258 0.92
36 40 0.063 4.4 8.2 2.9 2 23 1270 1291 1269 1291 0.97
37 40 9.8e-05 0.0069 17.1 1.1 3 23 1306 1326 1304 1326 0.96
38 40 0.00015 0.01 16.5 0.7 1 23 1332 1354 1332 1354 0.98
39 40 2.3e-06 0.00016 22.2 1.5 1 23 1360 1382 1360 1382 0.98
40 40 0.00047 0.033 14.9 0.3 1 22 1388 1409 1388 1409 0.95

Sequence Information

Coding Sequence
ATGTATAGTACTTCATTCGTTGAGGTAGAGTTGGATTCAGACGACGGTTCTACATCGGAACAGTGGTGGACTCCAAAAACAAAACAGTCTAAAAggaaaactaaaaagaaaatcaaCACCTGGAAATGCACCAAATGCAACATCCAATTAGATACGAGAACGAAATTTCTCGAACACAAAAAAACCCACAAACAACAAACATTAGACGACAGCCACTACAGTTACACTTTCGACTCTGTGAAAGACACGTACAGCTGTATCACATGCGACTACGAATGTCATTCAAAAGACGAAATAAAACAGCACGTTTCCGTACACAAAGATCGTTTTAAATGCTCAACGTGTGATATGCAGTTCGAAGAACCTTACAAATACGCTACACACGTAAACATTCACACGGGAAACATCGATTTTAAATGCCCATTGTGTGACGCATACCACACACCCAGTCGCAATTCGCTCCTTTTCCACATCAACACGTATCATTTAAAAAGGTACTACTACAGGTGCACCACATGCGGTAAGGGTTTCAATGATTGCGTCCAGTTCAAAGAGCACAATAACGTGCATCAAGGTTTGCGTCCGTTCAAGTGTGTCGTCTGCGGTAAAGACTTCGTCTTTTCCACCTATCTTCATACCCATCAAATACGTAATCACAAAGTCACCATCGACGGAATTATCGGTACGAATCAGTGTTACATTTGCCTGAGACGTTGTGCTAATCTGCGCACGTTACAAAGGCACATTAAAAAACATGAAAACCAAGTGAAAGCGAAGAAAGGAGAAAAGAGACATTTGTGTGACATATGCGGCAAAAGGTACGACGTCAAAGCGAAATTGGATACCCATTATCGTACGCATACAGGCGAAAAACCTTTTGCATGTTCGTACTGTCCGAAAAGCTTTACCAAACGGGAATATTTGGTAATGCACGAAAGAGTCCATAGTGGTGAGAAACCTTACGCATGTGAATATTGTGGAAAGTGCTTTAATCAAGGTGCACCTTTAAGGGTTCATATTCGGGGTCATACTGGTGAGCGTCCGATCAAAATTGAGATAAAGAGTGAAACGCCTCGTTATGAACACTTGCCTTACAAGAAGATCAATTCGAAAGGGAAAGAGAAGAAGAAGAAGTGGGGCACGTGGAAATGTACCAAATGCAGCGAAGTATTTCCAACGTGTACCCTTCTTAAGAAACATCGGAAAGTTCACGTGAAACCCAAATTCAATGACATCCAGTACAGTTACAATTTCGACGCTTCTCGAAACATTTATAACTGCGTAACGTGCGATTACGAATGCGATACGGAAGAAGAAATACGGAAGCATGCGATAACACATAAGGAATATTTCACGTGCAAAACGTGCAACAAGAAATTCGACGAACCTTACAAGTACGCGACACATGTAAACACTCACACTGGTAGTGAGAATTTCAAATGTCCTCTTTGTTTGACGTACGAAACGCCCAGACGGGTTTATCTTCATTCGCACATAAAAACGTTACATTTGCGCCAATACCATTACCGATGCGTCACATGCGGCAAAGGTTTCAATGATACCGTTCAATTCAAGGAACACAAGAATGTTCACGAGGGCTTAAGGCCGTTCAAGTGCGTGGTGTGCGGCAAGGATTTTCCCTTTTCGATTTATCTGACGACGCATCAACAACGATGTCACAAGGTCACTATAGACGGGGTCATTGGAACGACACAATGTTCCATTTGCTTGCGTAGATACGCTAACGTGCGCACGTACGAGAAGCACGTGAAAAAACACGAAAACGATGACAACAAAAAGAAGAAACCAGAAAAAAGACATTTATGCGACATTTGCGGTAAAGGATACGCAGTTAAAGAGAAGCTCATCATACATTATCGTACTCACACTGGTGATAAGCCGTACACGTGTTCGTACTGCCCAAAAAGTTTTACTAAGCGCGATTATTTGATAATGCACGAAAGGATTCATAGCGGAGAGAAACCGGTGCCAATAAAGTTAAAAAGCGAGCCTTCCTGCGACGAATCGTGGATACCAGAGAGTGAAAAgccagaaaaacaaaaaaggagaAGAAAGTCTCCAAGAATCTGGAACTGTACTAAATGCAACGCGAAATTTAACAAGAGCACCCAATTCCGTGACCATcgtaaaatacacaaaaaacCAGTGTATGACGATTCACAATACAGCTACACGTACGATCCCGTAAAAGAAACGTACAGCTGCGTGACGTGCGACTTGGAAGTCTCGTCGAAAGGCGAGATCCAAGAACACGTCAAACGCCATAAAGAACACTTTACGTGTGACACCTGCAATTTACAATTCGACGAACCGTACGAGTATGCAAAACATACCATCATCCACTCAGATGACAAAACCTTTAAATGTCCGATGTGTGAATCCTTTAAGACGAAAGCTCGGACTTCTTTACTGGCCCACATTAACACATTCCACCTTCACAGATACTTCTACAGATGCACCACATGCGGCAAAGGTTTCAACGATTGCGTCCAGTTCAGAGAACACAAGAACGTCCACGACGGGATAAAACCTTTCAAGTGCGTCGTTTGTGAGAAAGAGTTTACATTCTCAAATTACCTATTCGCCCATCAAGTGAGAAGTCATAAAGTTACAATCGATGGCGTCATCGGAACGAATCAATGTCACGTATGTTTACGAAGATTCGCAAACATACGGACTTTGCAAAAGCACATGGAGAAACATGAGAacgaaaaaaagaaggaacCCGAAAAGAAACACTTGTGCGATATTTGCGGAAAGGGGTATGCAAGAAAGGCAAAGTTGATTGTTCATTATCGAAATCATACCGGCGATAAACCGTTCAAATGTTCTTATTGTCCCAAGAGGTTTACTCAGAGGGAGTATGTTGTGCTTCACGAACGGGTTCACAGCGGGGAAAAACCTTATGCTTGTGAATTTTGCGGACGGTGCTTTAACCAAGGGGCACCGCTTAAAGTTCACATACGAACCCATACGGGAGAGCGCCCTTTTAGCTGCGAAATTTGCGACGCTGGAGATTTCAAGATCAAAACTGAAGATTCAGAAATCGAAGATTGGAAACCACCTACTACTAATAATGCTACAATTGATTCTACTACAACtgctactactactaatactacttCCACTGACAATGATTCGAAAACGAATAGCAAATCGAAATATGTGAAAGATTGGACATCGGCAAAGAAGAAACAAACCAGAACGAGACGGATATGGAAGTGTACCAAGTGTCCCGAAGAGTTCGAGACAAATAGAAAATTACGTGTTCACAGAAAAATCCACCAAAAAAACAAATTCGAAGAAACGAAATACAGTTACATTTGGGACGCAGCGAAAGACATTTACTGCTGCTTGACTTGTGACGCAGAATGCGGTACTAAAGAAGATGTCCAAAGACACGTATTAACACACGATGAACTTTACACGTGTGCAATATGCAACTTAACCTTTTCCGAACCCTACAAATACGCAACACACATATTTGTTCACAATAAAGATCATTTCTTCAAGTGTCCACTCTGCGACTCTTACACGACCCCTAAGAGAACCTGTTTGTTGTCACACATCAATAGTTTCCATTTAAAAAGGTTTATTTACACTTGCTCGACATGCGGTAAGGGTTTCAACGATTGCGTCCAGTTCAAAGAGCACAACAACATTCATAAAGGGGTTCGTCCGTTTGAGTGTATAGTTTGTGGTAAAGATTTCCCATTTTCGATCTACCTTCACACCCATCAAGTACGAAACCATAGGGTTTCGATCGATGGTGTTATCGGTACGAATCAGTGTTATGTATGCATGCGAAACTGCGCCAATCCTCAAACCCTCAAGAGACACATAAAGAAACATGCGAAACGGGATGAAAAGAGTGGTAATGAAAAGAAGCACTTGTGCGACATGTGCGGTAAGGGATTTGCGGTCAAGTACAAGCTGATTTTACATTATCGCACCCACACGGGGGATAAACCATACAGCTGTTCGTATTGCGCAAAGGGCTTCACTAAACGTGACTATTTGATAATGCACGAACGAATTCATAGCGGAGAAAAACCGTATTCATGCGAATATTGCGGGAAATGTTTCAACCAAACCGCCCCTCTCAGGGTGCACATACGTAGTCATACGGGAGAACGCCCCTTCGTTTGTCACATTTGTAACAGTAAATTTATTTCGAAGGGGGCTCTGAATATTCACATTAAACGGTGCACCGGAAGCGATTAA
Protein Sequence
MYSTSFVEVELDSDDGSTSEQWWTPKTKQSKRKTKKKINTWKCTKCNIQLDTRTKFLEHKKTHKQQTLDDSHYSYTFDSVKDTYSCITCDYECHSKDEIKQHVSVHKDRFKCSTCDMQFEEPYKYATHVNIHTGNIDFKCPLCDAYHTPSRNSLLFHINTYHLKRYYYRCTTCGKGFNDCVQFKEHNNVHQGLRPFKCVVCGKDFVFSTYLHTHQIRNHKVTIDGIIGTNQCYICLRRCANLRTLQRHIKKHENQVKAKKGEKRHLCDICGKRYDVKAKLDTHYRTHTGEKPFACSYCPKSFTKREYLVMHERVHSGEKPYACEYCGKCFNQGAPLRVHIRGHTGERPIKIEIKSETPRYEHLPYKKINSKGKEKKKKWGTWKCTKCSEVFPTCTLLKKHRKVHVKPKFNDIQYSYNFDASRNIYNCVTCDYECDTEEEIRKHAITHKEYFTCKTCNKKFDEPYKYATHVNTHTGSENFKCPLCLTYETPRRVYLHSHIKTLHLRQYHYRCVTCGKGFNDTVQFKEHKNVHEGLRPFKCVVCGKDFPFSIYLTTHQQRCHKVTIDGVIGTTQCSICLRRYANVRTYEKHVKKHENDDNKKKKPEKRHLCDICGKGYAVKEKLIIHYRTHTGDKPYTCSYCPKSFTKRDYLIMHERIHSGEKPVPIKLKSEPSCDESWIPESEKPEKQKRRRKSPRIWNCTKCNAKFNKSTQFRDHRKIHKKPVYDDSQYSYTYDPVKETYSCVTCDLEVSSKGEIQEHVKRHKEHFTCDTCNLQFDEPYEYAKHTIIHSDDKTFKCPMCESFKTKARTSLLAHINTFHLHRYFYRCTTCGKGFNDCVQFREHKNVHDGIKPFKCVVCEKEFTFSNYLFAHQVRSHKVTIDGVIGTNQCHVCLRRFANIRTLQKHMEKHENEKKKEPEKKHLCDICGKGYARKAKLIVHYRNHTGDKPFKCSYCPKRFTQREYVVLHERVHSGEKPYACEFCGRCFNQGAPLKVHIRTHTGERPFSCEICDAGDFKIKTEDSEIEDWKPPTTNNATIDSTTTATTTNTTSTDNDSKTNSKSKYVKDWTSAKKKQTRTRRIWKCTKCPEEFETNRKLRVHRKIHQKNKFEETKYSYIWDAAKDIYCCLTCDAECGTKEDVQRHVLTHDELYTCAICNLTFSEPYKYATHIFVHNKDHFFKCPLCDSYTTPKRTCLLSHINSFHLKRFIYTCSTCGKGFNDCVQFKEHNNIHKGVRPFECIVCGKDFPFSIYLHTHQVRNHRVSIDGVIGTNQCYVCMRNCANPQTLKRHIKKHAKRDEKSGNEKKHLCDMCGKGFAVKYKLILHYRTHTGDKPYSCSYCAKGFTKRDYLIMHERIHSGEKPYSCEYCGKCFNQTAPLRVHIRSHTGERPFVCHICNSKFISKGALNIHIKRCTGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-