Basic Information

Gene Symbol
Trerf1
Assembly
GCA_963921985.1
Location
OY998118.1:6228000-6254263[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-11 2.2e-08 34.3 0.0 2 46 1111 1155 1110 1155 0.96

Sequence Information

Coding Sequence
ATGAAAGAGCATGTAGAAAATATTCTAAAATCAAACCGGCCTAGAAAAATTACATTCTGGATAGATAGGAGAATCACAAGAAGGACTCAAAGAGATCCGTGGATGTCAGAACAAACGCAGCATCGGGATATTGTTAAAATTCTTAAACTAGAAGTGTGTGCCAAGGTCTTCGGGAATGCCTCAGCTTTAGCCAAACATAAACTGACCCACAGCGACGAGAGAAAATATGTCTGCAACATGTGCGGCAAAGCATTTAAAAGACAGGATCATCTTAACGGTCACATGTTGACTCATAGAAACAAAAAGCCATACGAATGTAAGGCTGAAGGTTGTGGAAAATCGTATTGTGATGCGAGGTCTTTGAGACGTCACACGGAGAACCATCACAGCAGTTCTTCAACCGTTAATACCACAACGACAACGACGCTGTCTCCCGCACAAGGAGCAGCATCTGGAGATGCGGCATCTCCGCATGGTTCCAGCTGTATACAGTACGCACCACCTCCCACATCAACCACATCATCTTCAGGGGGAAAAAGTCAGTTGCAGCAATTGCTAGCCAGCGAGCCAGCAACAAAGAATGGAACTGGTGGAAACAATGACGGTCTAACAAAGCAACAATTAGATCTTATTCATCAGATAATGGAACAAACTCAAAGACAATCTCAGGCAACTACCTCTAAAACATTAACGAAACCCATCAACAAATCAGCCGTCAAAACTACCACCAAAGTTCAAAAGTCATGGACAACAACGTCCCACACATCCTCTACCAACAAAGTAAGTACAAATATTTCGAGTCCACAAGCCAAAGTTTCAACCACTACTCCTTCGACCACTACAGTTAATTTAGTTGCAAAAAATCAAGGAGAAGCAAAGCCAGTCGAATGTAACTTATGCCACAGAAAATTCAAGAACATTCCGGCGTTGAATGGGCACATGAGGCTGCACGGAGGTTACTTCAAAAAgGATTCAGATAACAAGAAATgtgaaaagaaagaaaacaatGGTCCTCCTCTTCAGACAGCCAGCGTGAGCGTTAGAGCACTTatagaagaaaaaataataaacaaaaggaTCACGACGAATCCAACCCCGACAACCTTATCCTCTTCAACGTCTAACGAAGAATCGTCGCGTTCAGTGGCGCCTCCGCTCTTTCCCTTAACTGTGCATTCCCCATCGAGTTCAAGCGATTTGGACTCGACGAAAATTACCTCATTCGTGGTGCCTGCACCACCCCAACTTGCCATTGAAAAGGGCCGAAGACATTCCGACGCTGAAACGTTCGCTAGTACTCGATGTTCCACACCTCAGAAGGAAGCAGAGGCGCTGGCCGAACTGATCCTTAAAAAGGGAAAGGTTTCCGTCAAAAGGGCCGCGTCAGATCCGGGTCAGTCAGCACAACAAGTGATCCAATTGCAGAACGGAGAATCGCTCACGTTAAGAGGAGTATCGTATCAGCCTGACGATGCATCCGAATACTTTTCCTCGAGCTTACAAGATGAAGTATTCACACAGGTTCAAGACAGTATGATCCTTCAAAGTGTGGACGCTCAACAGTTGGCATCGATTTCTTTTTCTTCTGCCGATTCACTTTTACAAGAACAAAGCCAAAGCTTAACGGCATTGGACGATTACACTAACAACAGCAATGGAAACATACAAAGTTGCGTAGCACAATCGCCTGCGTCCTATCAGTCTAGTCACACGGTCAATCAAGAACTGCAGGCGGTTCTTGATTCGCCTCTTCCAGAAAGTTTGGCTGAGTTCGGAGCTTTTCATTCCTCGACTAACATCGACCTGCCGTCACCAGGGTACCAAACACAATCACCAGTACAATATTCGGAATCGCCACGAACATCCCTCGCTGCTCAATCACCTCTACAATCACCCCTCATTCGGCATGACTCTCCAGGATTCGCTTATCCGACACCTCCGGCTAGTCACGAAGGCCAAAGTCCCTGTTTTACACAAACGTCTGTCTATTCAACCATATCGCCCAAACAGAACGACTTTCAAATGAATAGCACAGATTTGGATGAACCTCCACAAGCATCATCTCCACTTTCGGCAGCTTTCTTCACGTCAACAATGTCCAGCTCTGCAGCTGTTGAAGAAGCGTTAGAAGAAGTTCTACCTGGAGAAACAATTTCATCAGACGATATCTATCCTCTAACCAATTCCCCAAATCCTCAATCACCCCTGTCAGTCGGTCTAACGCCGGTAGCGTCTCCTTTGCCTACCGTTTCAAATCAACCTGTTTCTTCTCCCCATTCTGTACCAACTTACACTGTTTCACCAAGTAATGTTGTCAAGTATCGGATATCGCCTCATCACACGTTACAATCACAAATGATGCCTAATTCTGATGACCCCTTGCTATCGAGTAGTCCCAAagatacaaaaaagaaattcgAATTCAACGGAATCCCGTTAAAAGTTATAAGCACCAACGGCCTAATAGAACTTAACAATTCCAACTTTACCGGCCTTCTATTAGATTCTAATGGAGAACTGAGACTTATTCAGACAAACGGTAATACGTTACAAACAAAGAACGTTGTGATCGGCACTTCTGCATTCTTTCAACAGACTACGGACAAAAATTCTGTAGAACATAAGGTTCAAGAGAATACGAACAAAAACTCACGTTATATGCAATTTCCTACATTACAAAAACAAACCGTTTCCGTTTCTAATAATTCTGGATTTAGAAAGGAAGACGACGGAAACATCTTTGTTAGTCCAGCAATGTTACCTTGCAGTCCTGCCAGACTATCAAGGAAAAGACCCAGAATAGAACCCTTACAACTTCCCATACTTTATCAGTCAAAGTTGAGGGCAACAAGGAGTAGACCCCAAGGATGCGCACCCTATACACCTCCTCCCATGCTGAATCCCTCAAGAGCCGGTTCAGGGCTCTACCATtcgttgaaaattaaaaaagAAATTAGTGATGACTATCCAAATTGTTGGAATACCGAATCTATACCAGAATCTGATTCGACTCCTCATATCAATATGGGCCCTAAATTTCAAAGCAGTATACCAAACCTACATCGTCGATATTCTGTTGAAAAAGAACAGTACAAGGAAAACCTCGTCTGGGCAcctaaaaatgataatattacTGAAAATGAAGtcgATATGTATTTGGACTTTGCATGCTGTGCTGCCGTGCCAGGCGGTGGACAGAACAAAGAATATGCTCTACATCTTCTAAACCTCTGTGGGGGCAATATTCACGAAGCTATGTTAAGGCTCATGCAATCGTCACCGACGCTCCCTTCAGACCATCCCCTTTTACATTATCAATACAATGACAGCGATAGATGGTCTCCCGAAGAAATAGAAGCTTTCCACCAAGGTTTAATCAAATACGACAaagatttctttttaatatccAAATACATCGGTTCGAAATCGACAAAACAGTGCGTCCAGTTTTATTACGTTTGGAAGAAAGTTTGCCTCGATgaatacaagaaaattaaacaaacgaGAGAGAAACGAAATTTCAATCATACCAACCACGAATCGGACTTTGACGAGAAGCCGTACCCGGACGTTAAACTGCTAGGGATTGCCGATACCGAATCGCCGATAGCATTCCCTGACCACAAGAATTTTATCTGCGAATATTCGGACTGTTCAGCTagTTTTAATTCAAAGGCAGCCTTAAACGGTCATATCCGGATCCATGGTGGTACAGCCCGTAATTCACCGACGTTTTCACTGATAGAACGACGTTCGTCAGTAACGACGGTGTGTCACGCAGACTCTCCAGAAGATTATCCTTGTAAGATTTGCGGGAAgatattttttaagataaaaaGTAGAAGCGCTCACATGAAATCCCATCGACCACCAGACACCGATTCGGCTAAAAGAAAAGACAAAGATTCAGCATCCTCGGACGCACTTCCTTCCAACTCGTTCAATACCTAG
Protein Sequence
MKEHVENILKSNRPRKITFWIDRRITRRTQRDPWMSEQTQHRDIVKILKLEVCAKVFGNASALAKHKLTHSDERKYVCNMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSSSTVNTTTTTTLSPAQGAASGDAASPHGSSCIQYAPPPTSTTSSSGGKSQLQQLLASEPATKNGTGGNNDGLTKQQLDLIHQIMEQTQRQSQATTSKTLTKPINKSAVKTTTKVQKSWTTTSHTSSTNKVSTNISSPQAKVSTTTPSTTTVNLVAKNQGEAKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDSDNKKCEKKENNGPPLQTASVSVRALIEEKIINKRITTNPTPTTLSSSTSNEESSRSVAPPLFPLTVHSPSSSSDLDSTKITSFVVPAPPQLAIEKGRRHSDAETFASTRCSTPQKEAEALAELILKKGKVSVKRAASDPGQSAQQVIQLQNGESLTLRGVSYQPDDASEYFSSSLQDEVFTQVQDSMILQSVDAQQLASISFSSADSLLQEQSQSLTALDDYTNNSNGNIQSCVAQSPASYQSSHTVNQELQAVLDSPLPESLAEFGAFHSSTNIDLPSPGYQTQSPVQYSESPRTSLAAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFTQTSVYSTISPKQNDFQMNSTDLDEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGETISSDDIYPLTNSPNPQSPLSVGLTPVASPLPTVSNQPVSSPHSVPTYTVSPSNVVKYRISPHHTLQSQMMPNSDDPLLSSSPKDTKKKFEFNGIPLKVISTNGLIELNNSNFTGLLLDSNGELRLIQTNGNTLQTKNVVIGTSAFFQQTTDKNSVEHKVQENTNKNSRYMQFPTLQKQTVSVSNNSGFRKEDDGNIFVSPAMLPCSPARLSRKRPRIEPLQLPILYQSKLRATRSRPQGCAPYTPPPMLNPSRAGSGLYHSLKIKKEISDDYPNCWNTESIPESDSTPHINMGPKFQSSIPNLHRRYSVEKEQYKENLVWAPKNDNITENEVDMYLDFACCAAVPGGGQNKEYALHLLNLCGGNIHEAMLRLMQSSPTLPSDHPLLHYQYNDSDRWSPEEIEAFHQGLIKYDKDFFLISKYIGSKSTKQCVQFYYVWKKVCLDEYKKIKQTREKRNFNHTNHESDFDEKPYPDVKLLGIADTESPIAFPDHKNFICEYSDCSASFNSKAALNGHIRIHGGTARNSPTFSLIERRSSVTTVCHADSPEDYPCKICGKIFFKIKSRSAHMKSHRPPDTDSAKRKDKDSASSDALPSNSFNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00030975;
90% Identity
iTF_00030975;
80% Identity
iTF_00030521;