Abig009329.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998121.1:15728602-15729027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-07 0.0004 20.3 0.0 1 39 12 49 12 54 0.92 2 2 1.1 1e+03 -0.2 0.0 17 24 128 135 121 136 0.84
Sequence Information
- Coding Sequence
- ATGGGTAAGAAAAATCGTATCAGGGCCAATTGGACAGAGGAGATGATGGAAGAGGCACTTCGGTTAATACAAAGGGGACATTCTCAAGAATCAGTGTCACAACGTTGTGGTATTCCCCGACGTACATTAAGAAACCATCTTAAATCCGGATCAAAGAAACGAGTAATGGGTGCAAAATCGGTTTTAAATAAGCAGCAAGAAAGTGATttagttgaaaaaataataaagtttgcTCAAAGAGGTTTTCCCCCTACTGCTAAGGTACTCCGTCGAAGTGTGtacaaattttgtgaaaaacttGGTGTGccatataaatttaatagagaGAAACAATTAGCAGGCAAAGAAATGTATCGGGCATTCTTAAAACGTAACCCGAATGTTTCTCAGCGAAGAGCGCAGCAACTGAATCCAGCTCGGGCTTAA
- Protein Sequence
- MGKKNRIRANWTEEMMEEALRLIQRGHSQESVSQRCGIPRRTLRNHLKSGSKKRVMGAKSVLNKQQESDLVEKIIKFAQRGFPPTAKVLRRSVYKFCEKLGVPYKFNREKQLAGKEMYRAFLKRNPNVSQRRAQQLNPARA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -