Abig012868.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:12426858-12430082[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-08 3.1e-05 23.9 0.0 2 44 14 56 13 57 0.94 2 2 1 1e+03 -0.2 0.0 17 33 391 406 389 415 0.74
Sequence Information
- Coding Sequence
- ATGGGTAAAACATGTCGTAGCATTCGTACTAAATGGAGAGAAGCAGATATGGAAGAAGCATTAAGGTTAGTTGGAGAAGGGTACTCTCAGCGGTACGTTTCACAATATTGGGGAATTCCTCGTCGTACTTTGAGAAATCATGTTAAATCGGGGAAATATTCAAGGTCACTTGGAAGGACACCAGCTTTAATTAAACAGTCAGAAGAAGAGTTAGAAGCAAAAATAATCCGGTTCTCACATATCGGGTTTCCCGTAACTCCAAAATCCCTAACCGATAAAGGCAATGCGACTGTCCTAATAAAAACCGAGGACTACAACAAGAAGATGGAAAAACTCTTGGATCCGCAAACCTACAAACCCATTAAGAAGGATTCAACGCAAGCTAGACTACGCACCATCAACCGACTCATCAAGTCATCGTCACTGCCCGAAGACACCAAAAAACGCATTGTGAGGACGGAAGCTGTCTCGCCAAGAATCTACGGACTACCTAAGATCCACAAGGCTGATATTCCATTAAGACCTATAATTAGCGCCCCCGGATCACCGACATACCACTTGTCGAAATACCTAGCATCACTGCTCCAGCCACACGTGGGAAAAAGTATCAGCCATATCAAGGACTCCACCGACTTCGTAAGCAAGATTCAGGATATCAACATTGGACCCAACGACATACTTGTAAGTTTCGACGTTGTCTCGCTTTTCACCAAAGTACCTCTGAGAGAAACTCTGAACCTAATGACCGGGATCTTCCCTGCCGATATTTGCAAACTCTTCGAAATCTGCCTCAGCGGAAGCTACTTCGTGTGGAAAGGAAACTTCTATGAACAAATGGACGGAGTAGCAATGGGAAGTCCACTTAGCCCGATTATGGCCAACCTCTTCATGGAACACTTCGAAAATAAAGCAATACAGACCTCAAAGTACAAGCCAACAACATGGTTTCGCTACGTGGACGATACTTTCGTGATTTGGAAACATGGCATGAAGGAACTCGACAACTTTTTACAACACCTTAACAGTCAGCATCCCAGTATCCAGTACACTATGGAGACTGAAAAGGACCAACAGCTGCCATTCCTGGATGTACTAGTGAAGAAACGAGGCAACAAATTAGGCCACACAGTATTCAGAAAACCAACTCACACGGACAGATACCTACACGCTATGTCTAACCATCATCCGAGTCAAAAATATGGAGTAATTAGAACGCTAACGGAACGAGCTCGAAGGATTTGTGAACCAGAGGACCTGCAGGCAGAGCTGGAACACCAGCGGACGGCCTTTCAAgcaaatggttacaacaaaaaggagatcgagagatcaatgggctcaagtacatcaagatcccgaaaaaccgaattacaacgcaccaccactcaagcttatctcccctatgttccgagagtcacagaatcggcagagttctga
- Protein Sequence
- MGKTCRSIRTKWREADMEEALRLVGEGYSQRYVSQYWGIPRRTLRNHVKSGKYSRSLGRTPALIKQSEEELEAKIIRFSHIGFPVTPKSLTDKGNATVLIKTEDYNKKMEKLLDPQTYKPIKKDSTQARLRTINRLIKSSSLPEDTKKRIVRTEAVSPRIYGLPKIHKADIPLRPIISAPGSPTYHLSKYLASLLQPHVGKSISHIKDSTDFVSKIQDINIGPNDILVSFDVVSLFTKVPLRETLNLMTGIFPADICKLFEICLSGSYFVWKGNFYEQMDGVAMGSPLSPIMANLFMEHFENKAIQTSKYKPTTWFRYVDDTFVIWKHGMKELDNFLQHLNSQHPSIQYTMETEKDQQLPFLDVLVKKRGNKLGHTVFRKPTHTDRYLHAMSNHHPSQKYGVIRTLTERARRICEPEDLQAELEHQRTAFQANGYNKKEIERSMGSSTSRSRKTELQRTTTQAYLPYVPRVTESAEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -