Abig011971.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- lov
- Assembly
- GCA_963921985.1
- Location
- OY998122.1:31993450-31995528[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-18 3e-15 55.9 0.0 1 44 389 432 389 433 0.96
Sequence Information
- Coding Sequence
- ATGTCGCAATCCCACTATTCGCTAAGATGGAACAATCATCAGGCCCACATACTTTCGGCTTTTGATGCTTTACTTCAAGCCGAAACTCTTGTAGATGTCACACTGGTATGCGCAGAGACGTCCGTAAGAGCACACAAGGTCGTTTTGAGTGCTTGCTCCCCATTTTTTCAAAGGGTTTTCTCTGAGAATCCTTGCAAGCATCCTGTAATAGTCCTGAAGGACTTTAGCGGATGGGAGGTCCAAGCGATCGTAGATTTTATGTACAAGGGAGAGATCAGTGTTGTCCAGGAGCAACTGCAAAGCCTTATCAAGGCTGCCGAGAGTTTACAGGTCAGAGGTCTCGCTCAACAGGATCAATTCGCCGTTGATAAGGATTCGAGTGCAATCACAAATCATATGCCGACGCCGTCGACGTCGCCGAATGACTACGATAGGAATTTTTATCCCACTGGAAGATTTCCAACTCCAGGAACTACTGTTAAAACTCCAGGAGAAAGGTCGTCGCCCTTTTCGCCTTTGCCAGGTCCGAATTTCGAACCTCCCTTGAAGTTACCCCACATGTCGCATTTATCGTTTCCCGAGACCCTTTTGCCACGTCAGGATTGTCAATCGCCGATCCCCAGGAGGAAACAGGCGAGGCCCAGGAGAAGATCGGGAGAAATGTGCGGAGCCCAGGATCTTAGCACCACGGCACCCAAAGTGCCCCCGTCGCCAGTCGAGGAGACGGCAGAGAATTTGTGCATGAAAAAACATACCAAAGAAAGCGATAGGCCGAAGGAGATGCTCAAAGTAAAAAAGTTAGAATCTAGAACGCCCGAACCCGAACTGACCAATCAACACGAGAAAGATTACAGTTCTTCTTCTCCCATGAGCTTGCCACCTATGCTGAGTATGCCTCAACATGACTTGGACAATCATTCACCTTTAGCCTTTCCTCCCATGCCTTCTGTTTCAGCACTTGCTATGACTCCTCCTCATACGAAGtTTTTTGGATTAGATTCGCCTTTGGGTCTTTTTCCCCCGGGACTAGAGGGTTGTAGGAATCCACTGTTGGAGATGGCCGACCCGCGAAACACCCCCGAGTCTCAACTGTTTACCAAAAAGAAAATGGGTAGGCCGAAAGGTCAACATTCTGCCCCTCGAGGAGGTCCTCCGCGATCTTGGACAAACGCGGAACTAACAGAAGCGCTTCAACACGTATGGAACAAGAAAATGACCACTAGTCAGGCTTCCAGGATTTTTGGCATTCCCTACAACTCTCTCCTAATGTACGTAAGAGGGAAATATGGGAAAAGTCTCAAATTAGAACAGCTCAGAAAAGACTGTATAGgTAACCCAACACCTGATTTTCTTCACATAGGaggaaacaacaacaacaacacatGCAAAAACGAACAAAGGGAACCGGAACCGATCCAGCCCAACACAAGACCTTCCAGTAGAGAGGACCTTTCGAATCCCCCTCCCGTATTTAATCCTTTCGCGCCCAGTTTTTATCCCGATTTCGGCACGGGATTTCCTATTCCCGTGAGCATGATCCATTTGCTGCCGCAAAGCGAAAAAAACCGAGATCACTACGGTCAGCAGCACCATCTTCTGGACGACGATCCGAAAACGGATCGAAACAAGGACCTCGGCGACGACCATCAGGATCTTTTCAAGCCACCAGCGATATCTCGCGACGAGAGGCGTGAACTTGTGCAACAGAACGGTCAAGACTAA
- Protein Sequence
- MSQSHYSLRWNNHQAHILSAFDALLQAETLVDVTLVCAETSVRAHKVVLSACSPFFQRVFSENPCKHPVIVLKDFSGWEVQAIVDFMYKGEISVVQEQLQSLIKAAESLQVRGLAQQDQFAVDKDSSAITNHMPTPSTSPNDYDRNFYPTGRFPTPGTTVKTPGERSSPFSPLPGPNFEPPLKLPHMSHLSFPETLLPRQDCQSPIPRRKQARPRRRSGEMCGAQDLSTTAPKVPPSPVEETAENLCMKKHTKESDRPKEMLKVKKLESRTPEPELTNQHEKDYSSSSPMSLPPMLSMPQHDLDNHSPLAFPPMPSVSALAMTPPHTKFFGLDSPLGLFPPGLEGCRNPLLEMADPRNTPESQLFTKKKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGNPTPDFLHIGGNNNNNTCKNEQREPEPIQPNTRPSSREDLSNPPPVFNPFAPSFYPDFGTGFPIPVSMIHLLPQSEKNRDHYGQQHHLLDDDPKTDRNKDLGDDHQDLFKPPAISRDERRELVQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032160;
- 90% Identity
- iTF_00030336;
- 80% Identity
- iTF_00030336;