Abig008665.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- bab2
- Assembly
- GCA_963921985.1
- Location
- OY998121.1:5161600-5170808[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-12 2.9e-09 36.8 0.0 1 39 373 412 373 416 0.90 2 4 4.2e-13 4.2e-10 39.4 0.1 1 39 427 465 427 469 0.95 3 4 1.5e-16 1.5e-13 50.5 0.0 1 45 482 527 482 527 0.97 4 4 2.6e-16 2.5e-13 49.7 0.0 1 39 534 573 534 576 0.94
Sequence Information
- Coding Sequence
- ATGACAGGGCAACACTACTGTTTACGATGGAACAATTACCAAAGTAACATGACCTCGGTGTTTCACCAGCTCCTACAAAACGAAGCATTCGTTGATGTTACCTTAGCATGTAAGGATTTGTCTCTTAAAGCTCACAAAGTGGTTTTGTCTGCATGTTCTTCTTATTTTCAAAAGCTTCTACTTGATAATCCCTGCAAACATCCGACTATCATAATGCCACAAGATGTCTGTTATGCGGACTTAAAGTTTATCATCGAATTCGTGTACAAAGGGGAAATTGATGTATCACAAACTGAACTTCAGtcATTACTGAAGACCGCCgaccaattaaaaataaagggTTTGTGCGAGTCGGAGGATAATAAGGACAAAGAAAGCTCTGTTCACTCACTACCAGTATCATCGAAGGATCGAAGCAAATTGAGAAAAATCTCGTCACCAAAACACATAAAGTTAGAAGAAATCAGTAGAAGTCAAGACTGTGATATAGAAAGAGAGTATCAAGACAGTTTAGATATAGGTGAAAGTGTTGTGGAAGAAAGATGTACAGAACGACGAAATAATTCGACAGACGAAGATAGCGATGGTCCCTTAGTTGTTGATGAAGAACCAAAGAGAAAGAAACCAGTAcaaaaccaaaataaaacaaatatgagCAGTCATGGTCTTCTTGAAGGACAGGCATTTTTCTCCCAGTTGTACGACAATGATGAATTCCCTCCGGAACCTCCTGCCCCGACAGCAATTCCTGTTGGGCATGTCGACATGCAAGACCATTCCCCCACCAGGTCCCTACTCTCTACTCATCGGACCGATATATcagaCTCGCATATTAAATATGAggatataaaaaaagaaactagTATTAAATTTGAAACCCTACGGTCTTACAAACATGAAATGATGGATCTAGATTCTTCGCAACTTTCAGAACCAGACCATTCATTAGATAGCTATGAAGACGCCGAAAGGGGACCTCATTCCATGATGGTAACTCCCGATATGAGCGGAATGGTATCAGGagATCACAATAATAGTAACGGGTATTCTCAACATAGAATTAATGACCAGGACACGCCTATCGGAAGATCTCACGGTGGAGGACCGAAGACATGGACTCAAGAAGATATGGATTTAGCATTAGATGCTCTTAGAAATCATAACATGAGTCTTACAaaggCTTCAGCGACGTATGGTATTCCATCAACAACTTTATGGCAAAGGGCGCACCGATTAGGAATAGATACCCCCAAGAAAGAAGGTCCCACGAAATCATGGAcggaagaaaatttaaattccGCACTAGAAGCACTCAGGACGGGAACTATTTCAGCGAATAAAGCTAGTAAAGCATACGGTATCCCCAGCAGCACCCTATACAAGATAGCAAGGAGAGAAGGTATTAAACTAGCAGCCCCTTTTAATGCAGCTCCAACAACATGGACTCAAGAAGACTTAGAAAAAGCTTTAGAATCAATCAGGACGGGACAATCTTCCGTTCAAAAGGCTTCTACGGAATTCGGAATTCCAACAGGAACTTTATACGGCAGGTGTAAAAGAGAAGGTATCGAATTATCCAGATCTAATCCTACGCCTTGGTCCGAGGATGCGATGGGTGAAGCACTCGAGGCTGTTAGattAGGTCATATGTCAATTAACCAGGCAGCGATACATTATAATTTGCCATATTCATCACTGTATGGTCGATTTAAAAGGGGCGTTAAATACGATATGGAGCCAATAGATACAAATAATTCCGACAGCCAATCGCAGCCAGAATCTCAGGTATTGCTCATGGACTATCCGAGTGCTCATCAGCAAATCCAGTACCAACACCATTTGAACAGCTGA
- Protein Sequence
- MTGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLDNPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQTELQSLLKTADQLKIKGLCESEDNKDKESSVHSLPVSSKDRSKLRKISSPKHIKLEEISRSQDCDIEREYQDSLDIGESVVEERCTERRNNSTDEDSDGPLVVDEEPKRKKPVQNQNKTNMSSHGLLEGQAFFSQLYDNDEFPPEPPAPTAIPVGHVDMQDHSPTRSLLSTHRTDISDSHIKYEDIKKETSIKFETLRSYKHEMMDLDSSQLSEPDHSLDSYEDAERGPHSMMVTPDMSGMVSGDHNNSNGYSQHRINDQDTPIGRSHGGGPKTWTQEDMDLALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWTQEDLEKALESIRTGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYDMEPIDTNNSDSQSQPESQVLLMDYPSAHQQIQYQHHLNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031713;
- 90% Identity
- iTF_00031713;
- 80% Identity
- iTF_00030334;