Aful006474.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384030.1:15486349-15490023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 2.3 10.3 4.6 2 23 215 237 215 237 0.91 2 10 0.0002 0.028 16.3 0.5 3 23 303 324 301 324 0.95 3 10 9.6 1.4e+03 1.6 7.6 3 23 426 447 425 447 0.95 4 10 0.1 14 7.8 0.1 2 23 508 530 508 530 0.93 5 10 0.00034 0.048 15.6 3.7 2 23 593 615 592 615 0.96 6 10 0.013 1.8 10.6 3.6 2 23 717 739 716 739 0.96 7 10 0.12 17 7.5 4.2 2 23 753 775 752 775 0.92 8 10 0.00076 0.11 14.5 0.4 2 23 852 874 852 874 0.93 9 10 0.43 61 5.8 1.6 1 23 952 974 952 974 0.98 10 10 0.00051 0.072 15.0 1.7 2 23 1010 1032 1009 1032 0.93
Sequence Information
- Coding Sequence
- ATGATGACCTCGGCACCCCCGGCGTGTCCACCAGCACCAACTGGACCACCTGGTTACCCATCACCGTCGCCATCTCCATCACCCGCGGTCGTCGCCAGTGCCGTGCTGGACGCCGACGTAGACAGCGCGTCGTTACGTCTGAAACGACCGCTAAACACCGCCAGCGACACATGCAAGAAACGCCGAAAGCAATCCACGCCCATTCGCATCTCCAGCACAGCAGGTACCGGCACCGATCTCAATGACCTCAATCTTGGCTTGTGCTACGAAGGTAAGATCCCAAGTTCTACCACCACTTTCCCTTCAATTCATTCCCCCGATCCGGAACCGGAGCACGAAGATTTAAATTTAAATACAAACATCGCGCTGCCTACTGTTAAAGTTGAAGCGGAGCAAAGTCCCAGTCCCGCTGAGCCTAGTTCTCCCTCGCTACCGGTGAATCTGTCTGGCGGTCAGAATTTTCCGCCCTGGCTGTCCGATGTACAGTCGTCCAAGACCAGCGACTGGTTGAGCGCGTCGGCGTCCGCTTCAACTGTGACACCGACATCGAGTTTAACCAATCACAACTTTTACGTACCTGTGCCCGTTAGTCGCACAACTTCAGTCTCGCAACCCCCCATCAGAATATTTAACCCTGAAGCTTACTGTGAATTGTGCAACAAGGAGTTCTGCAACAAGTACTTTCTTAAAACGCATAAAGCGAATAAACATAGAATATACACTGATCCACCCACAACCTCATCTACTTCTGATACGCTTAGTTTGCCTCCTGTCAACGTTCCATCATTCACCGCCACGACCACCGCCATCGCAATGAAAAAACCCGTCTCTATGTCTATGACCATGTCTGAGACTTTAAAGAATTCTCCACTTGTCAACGTCAACACGGAATTCATGGGTATTTTCTGTGACCTTTGCGGCAAGAACTTCGCAAATAAGATGATGCTAAAGACGCACAGGTTAAGCGTACACGGTGCAGTAGATCAAGACACAACCACCATTGAATCCGAATCGTTATCGTTAGGCTTAGGTTTACCAATGGACCCTGTTGTGCATAAAGAAGAGCGTGATCCTGACCTCGGTGAAATACAAACAGACAAGGACAGTAACAACATGTTTTATAAAACCGAACATTTTAAAGAGGATCTTGGGATCAGTCAGATGTCAACAATAGATCAAGAAGAAAACAATGAAAACCAAAACAGGGATCGAGAAAACATGGATTTTTCAATAAATCGACCGCGGCGTTTAGGAATCATGAATCCAGAAGCCTTCTGCGAGATTTGTTGTAAAGAATATTGTAATAAATACTTTTTACGTACGCATAAAATGAAGAGGCATGGAATTTTAATTCCAGATGAAAATTCCAAAGATAATCAAAAAGATTTCAAGTTAGAGTTATCAATTAGTAATAATTGGTACCAAATACAAACTAGCCCTTTAAACTTAATAATGGGTGAACAAAATACCAATAGTTCTGGATCGTATAGTGAACGAAAGTCATCACCAGCAAATGAAAACGAATGTGAAATATGCGGCATGCGTTTTCAAACATTGTATCTTGCACAACTTCATTTTGCAACCGCTCATTCTCAGTGCAAACCAAATAACATGCAAATTCAAAACGAAGAATTCTCAGGAAATAACAATGACAAACAAGCACCAGATTCCATCAGCGAGGATTTACAAAAATTGCAGACGATGATTTTACAGCTAAACGATCTAGATGTTAGTAAAGTTGGCGTTGGTGTACCTAACAATGGACCTACTTTATGCACTTGTAGTATGTGTGGAAAAGAATTTGAGAATAGATATTTCCTTCATGCTCATTTGATGACTGAACATGGAGTCTTACTGGAAAATAATGTTTCACAAATGACAGAAAAACAATTCGAAATGGACAATGGAGGCGAGATAACACCTGAAGTACTTCATCAACATCAACAACAACATACAGACAATCAACCGAAGATACCTAATTCTAGTACCATAAGCACCCCCACCTCCATATCTATGAGTACTTCTAGTGTTATGGACAAAAAGGATGATTCCAACGGTTTCATGGGGCCAGAAAAATCTCTTAGAACCAATGGCAACGCCGTAGGCTCTGAACGTCGTTCGTCGGTCACAATGACTCCAACCAACAGTTACTGTGAAATATGCAACAAAGAATTATGTAACAAATACTTCATGAAAACTCACATGCAACGAATGCATGGCATTGAAATCGAAAACGGTGCGCAAATCGGTGGTGTTGTGTGTAATATTTGCAACAAAGAATTGTGTAGTAAATATTTTTTACGGGTACATAAACACAATACCCATGGCATTGTCCAGGACAACATCGGAGGAACTTCAAACTCCAGTCAAACTCAGACGCGACAACCAAGTCTTGATTTAGAACAACACGGGTCATTATCATTAACAACACCTGTAGCAGTTGTGCCGCCGTCTACAGAAGTAAATGTAAGTGCAGGTGCAGCTACTGATCCTGCATTAAAACTCGGCGATCTCTCCGATTTAAGTAATCGGTACTTTACGCATTTTACCGAAGTGTGCACAATTTGCAGTCGTCGATTTAGAAGCACAAAATGGTTAAAAGCGCACTTACTAGGCGACCACGGTAAAGCAGGTACGGAGAAATGGAATGAACTGGAAATGCAATTACAGCAAAGTTTCGGCAGCCAGCAGCAAACGCAACAACGAAAGAACAGTATCAGTGATAGATCAACGTCAAGTCCAACTCTTCGAATACCAAATGGCGGCCAGGGTCAGGATAACACCAAATCTGAGGGGGGAGTGCAAAATGTACTTTCAACTATATTTGGAACAGATGAGACAAATGTTAAACAATATCATTGTTCATATTGTTCTTTTTCAACACCAGTTCTTGCATTTTTATTTGTTCACGAACGATCTCACTCTCACAATCGTGGAATGGGTATGACAGAAGTACAAAACTCATCAAATAGTACAAATACAAATACCAACACCACAAGTACAACGACTAGTGCAATATCTCCTTTGTATTGTGCTGTTTGTAACCAATCATTCCGACAACCAGAACAGCTCCATCATCATATTGTCTCACAGCATACATTCTTATCATTCTTTGGTAATGTTAGACAACCTCTACCGCAAATACAACAACAACAACAACAAATAGAACCATCAACACCAATAAAAACAGAACCAAAACGTGAAGATGAACCCAAATCACTAGAAGATCAAAAGTGCCCAAAGTGTACAACTTGCGGGGGAGGAAACAAACTGGAATTTACTACAGATATGAGTATAACATTAAAGGATGTATCAAAACAGAGACAATTACCAGCTTCGTATGCACTGCCCCAGCCCCAGTCACAATCTCAGTTTAAGGCAAAGTACATGATGCAGGCGTTTTTGATGGACGAGCCCACGAGAGAGAGGGATGCAGGATTGGCTAGTTTAGGAACAGAACAGACACTACTAGCAGCAGGAGCAAGTGGAACAGTAGCAGTAGTAGAAAGAAACGGCGATGAAGAGCAAAGTGAAAACATAAATACAAATTCAAATGCAGGAATAAATACATCAACATCAACGGACAGGAGATTTGCACCATCAATTGTCTTCCTTCCCGTCCTAGAGAAATTAACAGCTCCTCTCACTGTGTCGTTTACGTTAACTCCTGCCTAG
- Protein Sequence
- MMTSAPPACPPAPTGPPGYPSPSPSPSPAVVASAVLDADVDSASLRLKRPLNTASDTCKKRRKQSTPIRISSTAGTGTDLNDLNLGLCYEGKIPSSTTTFPSIHSPDPEPEHEDLNLNTNIALPTVKVEAEQSPSPAEPSSPSLPVNLSGGQNFPPWLSDVQSSKTSDWLSASASASTVTPTSSLTNHNFYVPVPVSRTTSVSQPPIRIFNPEAYCELCNKEFCNKYFLKTHKANKHRIYTDPPTTSSTSDTLSLPPVNVPSFTATTTAIAMKKPVSMSMTMSETLKNSPLVNVNTEFMGIFCDLCGKNFANKMMLKTHRLSVHGAVDQDTTTIESESLSLGLGLPMDPVVHKEERDPDLGEIQTDKDSNNMFYKTEHFKEDLGISQMSTIDQEENNENQNRDRENMDFSINRPRRLGIMNPEAFCEICCKEYCNKYFLRTHKMKRHGILIPDENSKDNQKDFKLELSISNNWYQIQTSPLNLIMGEQNTNSSGSYSERKSSPANENECEICGMRFQTLYLAQLHFATAHSQCKPNNMQIQNEEFSGNNNDKQAPDSISEDLQKLQTMILQLNDLDVSKVGVGVPNNGPTLCTCSMCGKEFENRYFLHAHLMTEHGVLLENNVSQMTEKQFEMDNGGEITPEVLHQHQQQHTDNQPKIPNSSTISTPTSISMSTSSVMDKKDDSNGFMGPEKSLRTNGNAVGSERRSSVTMTPTNSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVQDNIGGTSNSSQTQTRQPSLDLEQHGSLSLTTPVAVVPPSTEVNVSAGAATDPALKLGDLSDLSNRYFTHFTEVCTICSRRFRSTKWLKAHLLGDHGKAGTEKWNELEMQLQQSFGSQQQTQQRKNSISDRSTSSPTLRIPNGGQGQDNTKSEGGVQNVLSTIFGTDETNVKQYHCSYCSFSTPVLAFLFVHERSHSHNRGMGMTEVQNSSNSTNTNTNTTSTTTSAISPLYCAVCNQSFRQPEQLHHHIVSQHTFLSFFGNVRQPLPQIQQQQQQIEPSTPIKTEPKREDEPKSLEDQKCPKCTTCGGGNKLEFTTDMSITLKDVSKQRQLPASYALPQPQSQSQFKAKYMMQAFLMDEPTRERDAGLASLGTEQTLLAAGASGTVAVVERNGDEEQSENINTNSNAGINTSTSTDRRFAPSIVFLPVLEKLTAPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -